Mir-34-P2a

MirGeneDB ID

Rno-Mir-34-P2a

Family name

MIR-34 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-34b

Paralogues

Rno-Mir-34-P1 Rno-Mir-34-P2b Rno-Mir-34-P3a Rno-Mir-34-P3b Rno-Mir-34-P3c

Orthologues

Aae-Mir-34 Aca-Mir-34-P2a Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P2a Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P2a Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P2a Cin-Mir-34 Cja-Mir-34-P2a Cli-Mir-34-P2a Cmi-Mir-34-P2a Cpi-Mir-34-P2a Cpo-Mir-34-P2a Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P2a Dpu-Mir-34 Dre-Mir-34-P2a Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P2a Eca-Mir-34-P2a Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P2a Gga-Mir-34-P2a Gja-Mir-34-P2a Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P2a Isc-Mir-34 Laf-Mir-34-P2a Lch-Mir-34-P2a Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P2a Mdo-Mir-34-P2a Mgi-Mir-34 Mml-Mir-34-P2a Mmr-Mir-34-P2a Mmu-Mir-34-P2a Mom-Mir-34 Mun-Mir-34-P2a Neu-Mir-34-P2a-v1 Npo-Mir-34 Oan-Mir-34-P2a Obi-Mir-34 Ocu-Mir-34-P2a Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P2a Pau-Mir-34 Pbv-Mir-34-P2a Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pmi-Mir-34 Pve-Mir-34 Rph-Mir-34 Sha-Mir-34-P2a Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P2a Spu-Mir-34 Sto-Mir-34-P2a Tca-Mir-34 Tgu-Mir-34-P2a Tur-Mir-34 War-Mir-34 Xla-Mir-34-P2a1a Xla-Mir-34-P2a1b Xla-Mir-34-P2a2a Xla-Mir-34-P2a2b Xtr-Mir-34-P2a1 Xtr-Mir-34-P2a2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr8: 55492554-55492612 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P2a)

Mir-34-P2b chr8: 55492034-55492088 [-] UCSC Ensembl
Mir-34-P2a chr8: 55492554-55492612 [-] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

GCCGCGGCGGGCGCCCGGUGCUCGGUUUGUAGGCAGUGUAAUUAGCUGAUUGUAGUGCGGUGCUGACAAUCACUAACUCCACUGCCAUCAAAACAAGGCACAGCAUCACCCGCCGCCCG

Get precursor sequence

Structure

        10         20        30         40        50         
GCCGCGGCGGGCGCCCG-     CG    GUA-|      UAA    C       AGUGC 
                  GUGCU  GUUU    GGCAGUG   UUAG UGAUUGU     G
                  CACGG  CAAA    CCGUCAC   AAUC ACUAACA     G
GCCCGCCGCCCACUACGA     AA    ACUA^      CUC    -       GUCGU 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-34-P2a_5p

mirBase accession

MIMAT0000813

Sequence

0- AGGCAGUGUAAUUAGCUGAUUGU -23

Get sequence

Proposed targets

microrna.org: MIMAT0000813
TargetScanVert: rno-miR-34b-5p
miRDB: MIMAT0000813

Star sequence

Rno-Mir-34-P2a_3p*

mirBase accession

MIMAT0017105

Sequence

37- AAUCACUAACUCCACUGCCAUC -59

Get sequence

Proposed targets

TargetScanVert: rno-miR-34b-3p
miRDB: MIMAT0017105