Mir-34-P2a

MirGeneDB ID

Dre-Mir-34-P2a

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-34b

Paralogues

Dre-Mir-34-P1 Dre-Mir-34-P2b

Orthologues

Aae-Mir-34 Aca-Mir-34-P2a Ami-Mir-34-P2a Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P2a Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P2a Cgi-Mir-34 Cin-Mir-34 Cli-Mir-34-P2a Cmi-Mir-34-P2a Cpi-Mir-34-P2a Cpo-Mir-34-P2a Cte-Mir-34 Dan-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P2a Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P2a Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P2a Gga-Mir-34-P2a Gja-Mir-34-P2a Hsa-Mir-34-P2a Isc-Mir-34 Lch-Mir-34-P2a Lgi-Mir-34 Loc-Mir-34-P2a Mdo-Mir-34-P2a Mml-Mir-34-P2a Mmu-Mir-34-P2a Mun-Mir-34-P2a Npo-Mir-34 Oan-Mir-34-P2a Obi-Mir-34 Ocu-Mir-34-P2a Ovu-Mir-34 Pbv-Mir-34-P2a Pfl-Mir-34 Pmi-Mir-34 Rno-Mir-34-P2a Sha-Mir-34-P2a Sko-Mir-34 Spt-Mir-34-P2a Spu-Mir-34 Sto-Mir-34-P2a Tca-Mir-34 Tgu-Mir-34-P2a Xbo-Mir-34 Xla-Mir-34-P2a1a Xla-Mir-34-P2a1b Xla-Mir-34-P2a2a Xla-Mir-34-P2a2b Xtr-Mir-34-P2a1 Xtr-Mir-34-P2a2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(danRer11)

chr5: 57922533-57922591 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P2a)

Mir-34-P2b chr5: 57922296-57922352 [-] UCSC Ensembl
Mir-34-P2a chr5: 57922533-57922591 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAAUAUAUUAACAUGUUGGGGUUGGUCUGUAGGCAGUGUUGUUAGCUGAUUGUUUCAUAUGAACUAUAAUCACUAACCAUACUGCCAACACAACAACCUACAAGGAAACACAAAGCUGG

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Structure

        10          20        30        40        50         
UAAUAUAUUAACAUGUUG--|     GUC   A        U     C       UUCAU 
                    GGGUUG   UGU GGCAGUGU GUUAG UGAUUGU     A
                    UCCAAC   ACA CCGUCAUA CAAUC ACUAAUA     U
GGUCGAAACACAAAGGAACA^     AAC   A        C     -       UCAAG 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-34-P2a_5p

mirBase accession

MIMAT0003346

Sequence

0- AGGCAGUGUUGUUAGCUGAUUGU -23

Get sequence

Proposed targets

TargetScanFish: dre-miR-34b

Star sequence

Dre-Mir-34-P2a_3p*

mirBase accession

None

Sequence

37- AAUCACUAACCAUACUGCCAAC -59

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