Mir-34-P2a

MirGeneDB ID

Ami-Mir-34-P2a

Family name

MIR-34 (all species)

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-34b

Paralogues

Ami-Mir-34-P1 Ami-Mir-34-P2b Ami-Mir-34-P3a Ami-Mir-34-P3b Ami-Mir-34-P3c Ami-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P2a Aga-Mir-34 Agr-Mir-34 Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P2a Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P2a Cin-Mir-34 Cja-Mir-34-P2a Cli-Mir-34-P2a Cmi-Mir-34-P2a Cpi-Mir-34-P2a Cpo-Mir-34-P2a Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P2a Dpu-Mir-34 Dre-Mir-34-P2a Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P2a Eca-Mir-34-P2a Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P2a Gga-Mir-34-P2a Gja-Mir-34-P2a Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P2a Isc-Mir-34 Laf-Mir-34-P2a Lch-Mir-34-P2a Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P2a Mdo-Mir-34-P2a Mgi-Mir-34 Mml-Mir-34-P2a Mmr-Mir-34-P2a Mmu-Mir-34-P2a Mom-Mir-34 Mun-Mir-34-P2a Neu-Mir-34-P2a-v1 Npo-Mir-34 Oan-Mir-34-P2a Obi-Mir-34 Ocu-Mir-34-P2a Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P2a Pau-Mir-34 Pbv-Mir-34-P2a Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P2a Rph-Mir-34 Sha-Mir-34-P2a Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P2a Spu-Mir-34 Sto-Mir-34-P2a Tca-Mir-34 Tgu-Mir-34-P2a Tur-Mir-34 War-Mir-34 Xla-Mir-34-P2a1a Xla-Mir-34-P2a1b Xla-Mir-34-P2a2a Xla-Mir-34-P2a2b Xtr-Mir-34-P2a1 Xtr-Mir-34-P2a2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017710534.1: 1302497-1302555 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-34-P2a)

Mir-34-P2b NW_017710534.1: 1301780-1301834 [-] UCSC
Mir-34-P2a NW_017710534.1: 1302497-1302555 [-] UCSC

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

CUCCCGUCACCGAAGUAGUGUUUGGUUUGUAGGCAGUGUAGUUAGCUGAUUGUGUCAGUCCCUUGGCAAUCACUAACUUCACUGCCAUCAAAACAAGGCACAGAAUUCCUUGCUUUCCG

Get precursor sequence

Structure

        10         20         30        40        50         
CUCCCGUCACCGAAGUA-      GG-|   UA       U      C       GUCAG 
                  GUGUUU   UUUG  GGCAGUG AGUUAG UGAUUGU     U
                  CACGGA   AAAC  CCGUCAC UCAAUC ACUAACG     C
GCCUUUCGUUCCUUAAGA      ACA^   UA       U      -       GUUCC 
       110       100        90        80         70        60