Mir-34-P3a

MirGeneDB ID

Ocu-Mir-34-P3a

Family name

MIR-34 (all species)

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

Paralogues

Ocu-Mir-34-P1 Ocu-Mir-34-P2a Ocu-Mir-34-P2b Ocu-Mir-34-P3b Ocu-Mir-34-P3c

Orthologues

Aae-Mir-34 Aca-Mir-34-P3a Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3a Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3a Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cja-Mir-34-P3a-v1 Cli-Mir-34-P3a Cmi-Mir-34-P3a Cpi-Mir-34-P3a Cpo-Mir-34-P3a Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3a Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gga-Mir-34-P3a Gja-Mir-34-P3a Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3a-v1 Isc-Mir-34 Lch-Mir-34-P3a Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3a Mgi-Mir-34 Mmu-Mir-34-P3a Mom-Mir-34 Mun-Mir-34-P3a Npo-Mir-34 Oan-Mir-34-P3a Obi-Mir-34 Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3a Pau-Mir-34 Pbv-Mir-34-P3a Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3a Rph-Mir-34 Sko-Mir-34 Snu-Mir-34 Spu-Mir-34 Sto-Mir-34-P3a Tca-Mir-34 Tgu-Mir-34-P3a Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3a1 Xla-Mir-34-P3a2 Xtr-Mir-34-P3a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(oryCun2_add)

chr11: 71143078-71143138 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3a)

Mir-34-P3c chr11: 71142265-71142326 [-] UCSC Ensembl
Mir-34-P3b chr11: 71142387-71142447 [-] UCSC Ensembl
Mir-34-P3a chr11: 71143078-71143138 [-] UCSC Ensembl

Seed

GGCAGUG

Precursor
(pre-Mir +30nt flank)

CGCGGAGGCCGAGGCGUGGAUGUGUCAGGUCGGCAGUGCACCGCUAGCUGGCUGUCGGGAUGCGGGUCACAGCCGCUGGCUGCACUCCCCUCUGUGGCGUCCGGAAGCCGGCCUCCCGGAG

Get precursor sequence

Structure

        10          20        30        40        50        60  
CGCGGAGGCCGAGGCGU--|     GU    UC  C      CC      U      CGGGAU 
                   GGAUGU  CAGG  GG AGUGCA  GCUAGC GGCUGU      \
                   CCUGCG  GUCU  CC UCACGU  CGGUCG CCGACA      G
GAGGCCCUCCGGCCGAAGG^     GU    CC  -      --      -      CUGGGC 
 .       110       100        90           80         70

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

He	Ki	Te	To	Wh

Mature sequence

Ocu-Mir-34-P3a_5p

mirBase accession

None

Sequence

0- CGGCAGUGCACCGCUAGCUGGCUGU -25

Get sequence

Star sequence

Ocu-Mir-34-P3a_3p*

mirBase accession

None

Sequence

39- CAGCCGCUGGCUGCACUCCCCU -61

Get sequence