MirGeneDB 2.1
MirGeneDB ID

Cli-Mir-15-P1a

Family name MIR-15 (all species)
Seed AGCAGCA
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-15a
Paralogues Cli-Mir-15-P1b  Cli-Mir-15-P1c  Cli-Mir-15-P2a  Cli-Mir-15-P2b  Cli-Mir-15-P2c 
Orthologues Ami-Mir-15-P1a  Bta-Mir-15-P1a  Cfa-Mir-15-P1a  Cin-Mir-15-P1  Cmi-Mir-15-P1a  Cpi-Mir-15-P1a  Cpo-Mir-15-P1a  Dno-Mir-15-P1a  Dre-Mir-15-P1a1  Dre-Mir-15-P1a2  Ete-Mir-15-P1a  Gga-Mir-15-P1a  Gja-Mir-15-P1a  Gmo-Mir-15-P1a2  Hsa-Mir-15-P1a  Lch-Mir-15-P1a  Loc-Mir-15-P1a  Mal-Mir-15-P1a2  Mdo-Mir-15-P1a  Mml-Mir-15-P1a  Mmu-Mir-15-P1a  Mun-Mir-15-P1a  Oan-Mir-15-P1a  Ocu-Mir-15-P1a  Rno-Mir-15-P1a  Sha-Mir-15-P1a  Spt-Mir-15-P1a  Sto-Mir-15-P1a  Tgu-Mir-15-P1a  Tni-Mir-15-P1a2  Xla-Mir-15-P1a3  Xla-Mir-15-P1a4  Xtr-Mir-15-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(colLiv2)		 scaffold17: 15185606-15185664 [-]
Clustered miRNAs
(< 50kb from Mir-15-P1a)		 Mir-15-P2a scaffold17: 15185461-15185523 [-]
Mir-15-P1a scaffold17: 15185606-15185664 [-]
Precursor
(pre-Mir +30nt flank)
UUGAAGUAUGGUAGACACCUUGGCAUAACGUAGCAGCACAUAAUGGUUUGUGGGUUUUGAAAAGGUGCAGGCCAUAUUGUGCUGCCUCAAAAAUACAAGGAUUUCAUCGUCCUGAAGAG
Get precursor sequence
Structure
        10          20        30        40        50         
UUGAAGUAUGGUAGACA--|    GCAUAACGUA        UA         GGGUUUU 
                   CCUUG          GCAGCACA  AUGGUUUGU       \
                   GGAAC          CGUCGUGU  UACCGGACG       G
GAGAAGUCCUGCUACUUUA^    AUAAAAACUC        UA         UGGAAAA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Cl Cl Cl Cl Cl To
Mature sequence

Cli-Mir-15-P1a_5p
mirBase accessionMIMAT0038410
Sequence 
0- UAGCAGCACAUAAUGGUUUGUG -22
Get sequence
Star sequence

Cli-Mir-15-P1a_3p*
mirBase accessionMIMAT0038411
Sequence 
37- CAGGCCAUAUUGUGCUGCCUCA -59
Get sequence