MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-15-P1a

Family name MIR-15 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-15-P1b  Cja-Mir-15-P1c  Cja-Mir-15-P1d  Cja-Mir-15-P2a  Cja-Mir-15-P2b  Cja-Mir-15-P2c  Cja-Mir-15-P2d 
Orthologues Ami-Mir-15-P1a  Bta-Mir-15-P1a  Cfa-Mir-15-P1a  Cin-Mir-15-P1  Cli-Mir-15-P1a  Cmi-Mir-15-P1a  Cpi-Mir-15-P1a  Cpo-Mir-15-P1a  Dno-Mir-15-P1a  Dre-Mir-15-P1a1  Dre-Mir-15-P1a2  Eca-Mir-15-P1a  Ete-Mir-15-P1a  Gga-Mir-15-P1a  Gja-Mir-15-P1a  Gmo-Mir-15-P1a2  Hsa-Mir-15-P1a  Laf-Mir-15-P1a  Lch-Mir-15-P1a  Loc-Mir-15-P1a  Mal-Mir-15-P1a2  Mdo-Mir-15-P1a  Mml-Mir-15-P1a  Mmr-Mir-15-P1a  Mmu-Mir-15-P1a  Mun-Mir-15-P1a  Neu-Mir-15-P1a  Oan-Mir-15-P1a  Ocu-Mir-15-P1a  Pab-Mir-15-P1a  Rno-Mir-15-P1a  Sha-Mir-15-P1a  Spt-Mir-15-P1a  Sto-Mir-15-P1a  Tgu-Mir-15-P1a  Tni-Mir-15-P1a2  Xla-Mir-15-P1a3  Xla-Mir-15-P1a4  Xtr-Mir-15-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021915.1: 65214033-65214091 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1a)		 Mir-15-P1a CM021915.1: 65214033-65214091 [+] UCSC Ensembl
Mir-15-P2a CM021915.1: 65214173-65214237 [+] UCSC Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
UUUUAAAAAAAACAAAACCUUGGAGUAAAGUAGCAGCACAUAAUGGUUUGUGGAUUUUGAAAAGGUGCAGGCCAUAUUGUGCUGCCUCAAAAAUACAAGGAUCUGAUCUUCUGAAAAAA
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Structure
        10          20        30        40        50         
UUUUAAAAAAAACAAAA--|    GAGUAAAGUA        UA         GGAUUUU 
                   CCUUG          GCAGCACA  AUGGUUUGU       \
                   GGAAC          CGUCGUGU  UACCGGACG       G
AAAAAAGUCUUCUAGUCUA^    AUAAAAACUC        UA         UGGAAAA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
- +
To
Mature sequence

Cja-Mir-15-P1a_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACAUAAUGGUUUGUG -22
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Star sequence

Cja-Mir-15-P1a_3p* (predicted)
mirBase accessionNone
Sequence 
37- CAGGCCAUAUUGUGCUGCCUCA -59
Get sequence