MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-15-P1a

Family name MIR-15 (all species)
Seed AGCAGCA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-15a
Paralogues Cpo-Mir-15-P1b  Cpo-Mir-15-P1c  Cpo-Mir-15-P1d  Cpo-Mir-15-P2a  Cpo-Mir-15-P2b  Cpo-Mir-15-P2c  Cpo-Mir-15-P2d 
Orthologues Ami-Mir-15-P1a  Bta-Mir-15-P1a  Cfa-Mir-15-P1a  Cin-Mir-15-P1  Cli-Mir-15-P1a  Cmi-Mir-15-P1a  Cpi-Mir-15-P1a  Dno-Mir-15-P1a  Dre-Mir-15-P1a1  Dre-Mir-15-P1a2  Ete-Mir-15-P1a  Gga-Mir-15-P1a  Gja-Mir-15-P1a  Gmo-Mir-15-P1a2  Hsa-Mir-15-P1a  Lch-Mir-15-P1a  Loc-Mir-15-P1a  Mal-Mir-15-P1a2  Mdo-Mir-15-P1a  Mml-Mir-15-P1a  Mmu-Mir-15-P1a  Mun-Mir-15-P1a  Oan-Mir-15-P1a  Ocu-Mir-15-P1a  Rno-Mir-15-P1a  Sha-Mir-15-P1a  Spt-Mir-15-P1a  Sto-Mir-15-P1a  Tgu-Mir-15-P1a  Tni-Mir-15-P1a2  Xla-Mir-15-P1a3  Xla-Mir-15-P1a4  Xtr-Mir-15-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(cavPor3)
scaffold_6: 59875535-59875593 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-15-P1a)
Mir-3613 scaffold_6: 59835890-59835947 [-] UCSC
Mir-15-P2a scaffold_6: 59875390-59875454 [-] UCSC
Mir-15-P1a scaffold_6: 59875535-59875593 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AAAAAAACAACAAAAAACCUUGGAGUAAAGUAGCAGCACAUAAUGGUUUGUGGAUUUUGAAAAGGUGCAGGCCAUAUUGUGCUGCCUCAAAAAUACAAGGAUCUGAUCUUCUGAAGAAA
Get precursor sequence
Structure
        10          20        30        40        50         
AAAAAAACAACAAAAAA--|    GAGUAAAGUA        UA         GGAUUUU 
                   CCUUG          GCAGCACA  AUGGUUUGU       \
                   GGAAC          CGUCGUGU  UACCGGACG       G
AAAGAAGUCUUCUAGUCUA^    AUAAAAACUC        UA         UGGAAAA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Cpo-Mir-15-P1a_5p

mirBase accessionMIMAT0046849
Sequence
0- UAGCAGCACAUAAUGGUUUGUG -22
Get sequence
Star sequence

Cpo-Mir-15-P1a_3p*

mirBase accessionMIMAT0046850
Sequence
37- CAGGCCAUAUUGUGCUGCCUCA -59
Get sequence