Mir-15-P1a

MirGeneDB ID

Mun-Mir-15-P1a

Family name

MIR-15 (all species)

Species

Microcaecilia (Microcaecilia unicolor)

MiRBase ID

Paralogues

Mun-Mir-15-P1b Mun-Mir-15-P1c Mun-Mir-15-P2a Mun-Mir-15-P2b Mun-Mir-15-P2c

Orthologues

Ami-Mir-15-P1a Bta-Mir-15-P1a Cfa-Mir-15-P1a Cin-Mir-15-P1 Cja-Mir-15-P1a Cli-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dno-Mir-15-P1a Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Eca-Mir-15-P1a Ete-Mir-15-P1a Gga-Mir-15-P1a Gja-Mir-15-P1a Gmo-Mir-15-P1a2 Hsa-Mir-15-P1a Laf-Mir-15-P1a Lch-Mir-15-P1a Loc-Mir-15-P1a Mal-Mir-15-P1a2 Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmr-Mir-15-P1a Mmu-Mir-15-P1a Neu-Mir-15-P1a Oan-Mir-15-P1a Ocu-Mir-15-P1a Pab-Mir-15-P1a Rno-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Sto-Mir-15-P1a Tgu-Mir-15-P1a Tni-Mir-15-P1a2 Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xtr-Mir-15-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_901765095.2_aMicUni1.2)

LR594635.1: 91355591-91355649 [+]

Clustered miRNAs
(< 50kb from Mir-15-P1a)

Mir-15-P1a LR594635.1: 91355591-91355649 [+]
Mir-15-P2a LR594635.1: 91355735-91355799 [+]

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

AUUAACUUUGUCAAUAACCUUGGAGUAAAGUAGCAGCACAUAAUGGUUUGUGGAAUAUAAGAAGAUGCAGGCCAUAUUGUGCUGCCUCAUAAAUACAAGGCCUUCAUCUUCUGAAAAUC

Get precursor sequence

Structure

        10          20        30        40        50         
AUUAACUUUGUCAAUAA--|    GAGUAAAGUA        UA          GAAUAU 
                   CCUUG          GCAGCACA  AUGGUUUGUG      \
                   GGAAC          CGUCGUGU  UACCGGACGU      A
CUAAAAGUCUUCUACUUCC^    AUAAAUACUC        UA          AGAAGA 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Mun-Mir-15-P1a_5p

mirBase accession

None

Sequence

0- UAGCAGCACAUAAUGGUUUGUG -22

Get sequence

Star sequence

Mun-Mir-15-P1a_3p* (predicted)

mirBase accession

None

Sequence

37- CAGGCCAUAUUGUGCUGCCUCA -59

Get sequence