Mir-15-P1a

MirGeneDB ID

Oan-Mir-15-P1a

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

oan-mir-15a

Paralogues

Oan-Mir-15-P1b Oan-Mir-15-P1c Oan-Mir-15-P1d Oan-Mir-15-P2a Oan-Mir-15-P2b Oan-Mir-15-P2c Oan-Mir-15-P2d

Orthologues

Ami-Mir-15-P1a Bta-Mir-15-P1a Cfa-Mir-15-P1a Cin-Mir-15-P1 Cli-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dno-Mir-15-P1a Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Ete-Mir-15-P1a Gga-Mir-15-P1a Gja-Mir-15-P1a Gmo-Mir-15-P1a2 Hsa-Mir-15-P1a Lch-Mir-15-P1a Loc-Mir-15-P1a Mal-Mir-15-P1a2 Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmu-Mir-15-P1a Mun-Mir-15-P1a Ocu-Mir-15-P1a Rno-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Sto-Mir-15-P1a Tgu-Mir-15-P1a Tni-Mir-15-P1a2 Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xtr-Mir-15-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041747.1: 8171572-8171627 [+]

Clustered miRNAs
(< 50kb from Mir-15-P1a)

Mir-15-P1a NC_041747.1: 8171572-8171627 [+]
Mir-15-P2a NC_041747.1: 8171709-8171773 [+]

Precursor
(pre-Mir +30nt flank)

GAGCUAGCUUGAAGACACCUUGGGGUAAAGUAGCAGCACAUAAUGGUUUGUGAGUUUUGAAAUACAGGCCAUAUUGUGCUGCCUCAAAAAUACAAGGAUCUGAUCUUCUGAAGACA

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Structure

        10          20        30        40        50       
GAGCUAGCUUGAAGACA--|    GGGUAAAGUA        UA          AGUU 
                   CCUUG          GCAGCACA  AUGGUUUGUG    U
                   GGAAC          CGUCGUGU  UACCGGACAU    U
ACAGAAGUCUUCUAGUCUA^    AUAAAAACUC        UA          AAAG 
    110       100        90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Oan-Mir-15-P1a_5p

mirBase accession

MIMAT0007164

Sequence

0- UAGCAGCACAUAAUGGUUUGUG -22

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Star sequence

Oan-Mir-15-P1a_3p*

mirBase accession

MIMAT0007165

Sequence

34- CAGGCCAUAUUGUGCUGCCUCA -56

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