Mir-15-P1a2

MirGeneDB ID

Dre-Mir-15-P1a2

Family name

MIR-15 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-15a-2

Paralogues

Dre-Mir-15-P1a1 Dre-Mir-15-P1b Dre-Mir-15-P1d Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Dre-Mir-15-P2b Dre-Mir-15-P2c-v1 Dre-Mir-15-P2d

Orthologues

Ami-Mir-15-P1a Bta-Mir-15-P1a Cfa-Mir-15-P1a Cin-Mir-15-P1 Cja-Mir-15-P1a Cli-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dno-Mir-15-P1a Eca-Mir-15-P1a Ete-Mir-15-P1a Gga-Mir-15-P1a Gja-Mir-15-P1a Gmo-Mir-15-P1a2 Hsa-Mir-15-P1a Laf-Mir-15-P1a Lch-Mir-15-P1a Loc-Mir-15-P1a Mal-Mir-15-P1a2 Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmr-Mir-15-P1a Mmu-Mir-15-P1a Mun-Mir-15-P1a Neu-Mir-15-P1a Oan-Mir-15-P1a Ocu-Mir-15-P1a Pab-Mir-15-P1a Rno-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Sto-Mir-15-P1a Tgu-Mir-15-P1a Tni-Mir-15-P1a2 Xtr-Mir-15-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Olfactores

Genome context
(danRer11)

chr9: 29652531-29652588 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1a2)

Mir-15-P2a2 chr9: 29652389-29652453 [-] UCSC Ensembl
Mir-15-P1a2 chr9: 29652531-29652588 [-] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

CAUGUAGCCGAGGCUCUCUAGGUGAUGGUGUAGCAGCACAGAAUGGUUUGUGGUGAUACAGAGAUGCAGGCCAUGAUGUGCUGCAGCAUCAAUUCCUGGGACCUACGCAGUUGAGAGA

Get precursor sequence

Structure

        10          20        30        40        50        
CAUGUAGCCGAGGCUCU--|    UGA      A        GA          GUGAU 
                   CUAGG   UGGUGU GCAGCACA  AUGGUUUGUG     A
                   GGUCC   ACUACG CGUCGUGU  UACCGGACGU     C
AGAGAGUUGACGCAUCCAG^    UUA      A        AG          AGAGA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-15-P1a2_5p

mirBase accession

MIMAT0001772

Sequence

0- UAGCAGCACAGAAUGGUUUGUG -22

Get sequence

Proposed targets

TargetScanFish: dre-miR-15a

Star sequence

Dre-Mir-15-P1a2_3p*

mirBase accession

None

Sequence

36- CAGGCCAUGAUGUGCUGCAGCA -58

Get sequence