Mir-15-P2d

MirGeneDB ID

Dre-Mir-15-P2d

Family name

MIR-15 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-457a

Paralogues

Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Dre-Mir-15-P1b Dre-Mir-15-P1d Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Dre-Mir-15-P2b Dre-Mir-15-P2c-v1

Orthologues

Aca-Mir-15-P2d Ami-Mir-15-P2d Bta-Mir-15-P2d Cfa-Mir-15-P2d Cin-Mir-15-P2 Cja-Mir-15-P2d Cpo-Mir-15-P2d Dno-Mir-15-P2d Eca-Mir-15-P2d Ete-Mir-15-P2d Gja-Mir-15-P2d Hsa-Mir-15-P2d Laf-Mir-15-P2d Loc-Mir-15-P2d Mal-Mir-15-P2d Mdo-Mir-15-P2d Mml-Mir-15-P2d Mmr-Mir-15-P2d Mmu-Mir-15-P2d Neu-Mir-15-P2d Oan-Mir-15-P2d Ocu-Mir-15-P2d Pab-Mir-15-P2d Rno-Mir-15-P2d Sha-Mir-15-P2d Sto-Mir-15-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(danRer11)

chr7: 26071436-26071500 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2d)

Mir-15-P1d chr7: 26070912-26070973 [+] UCSC Ensembl
Mir-15-P2d chr7: 26071436-26071500 [+] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

GACCACUUGAUGCCUCAGUGUGCCUGACAGAAGCAGCACAUCAAUAUUGGCAGCUGCCCUCUCUCUGGGUUGCCAGUAUGGUUUGUGCUGCUCCCGUCAGACAGACACACUCAGCGAUCCUCCAG

Get precursor sequence

Structure

        10          20        30        40         50        60 
GACCACUUGAUGCCUCA--  G  C     AGA         UCA-|        GCUGCCCU 
                   GU UG CUGAC   AGCAGCACA    AUAUUGGCA        C
                   CA AC GACUG   UCGUCGUGU    UAUGACCGU        U
GACCUCCUAGCGACUCACA  G  A     CCC         UUGG^        UGGGUCUC 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-15-P2d_5p

mirBase accession

MIMAT0001883

Sequence

0- AAGCAGCACAUCAAUAUUGGCA -22

Get sequence

Proposed targets

TargetScanFish: dre-miR-457a

Star sequence

Dre-Mir-15-P2d_3p*

mirBase accession

None

Sequence

42- CCAGUAUGGUUUGUGCUGCUCCC -65

Get sequence