MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-15-P2d

Family name MIR-15 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID
Paralogues Ami-Mir-15-P1a  Ami-Mir-15-P1b  Ami-Mir-15-P1c  Ami-Mir-15-P1d  Ami-Mir-15-P2a  Ami-Mir-15-P2b  Ami-Mir-15-P2c 
Orthologues Aca-Mir-15-P2d  Bta-Mir-15-P2d  Cfa-Mir-15-P2d  Cin-Mir-15-P2  Cja-Mir-15-P2d  Cpo-Mir-15-P2d  Dno-Mir-15-P2d  Dre-Mir-15-P2d  Eca-Mir-15-P2d  Ete-Mir-15-P2d  Gja-Mir-15-P2d  Hsa-Mir-15-P2d  Laf-Mir-15-P2d  Loc-Mir-15-P2d  Mal-Mir-15-P2d  Mdo-Mir-15-P2d  Mml-Mir-15-P2d  Mmr-Mir-15-P2d  Mmu-Mir-15-P2d  Neu-Mir-15-P2d  Oan-Mir-15-P2d  Ocu-Mir-15-P2d  Pab-Mir-15-P2d  Rno-Mir-15-P2d  Sha-Mir-15-P2d  Sto-Mir-15-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017712037.1: 56133-56188 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-15-P2d)		 Mir-15-P2d NW_017712037.1: 56133-56188 [-] UCSC
Mir-15-P1d NW_017712037.1: 56271-56327 [-] UCSC
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
CCUCUCCCCCCCCUCCCAGCCCCUCCACUCUAGCAGCACAUAGAUAUUGGCGCUCUCAGUCCUGCCAGUGUCCUUGUGCUGCCCCAGUGAGGUCGGGCCACUGUCUACUGGGACCA
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Structure
        10        20          30        40        50       
CCUCUCCCCCCCCUCCCA    --|UC    CUA        UA          CUCU 
                  GCCC  C  CACU   GCAGCACA  GAUAUUGGCG    C
                  CGGG  G  GUGA   CGUCGUGU  CUGUGACCGU    A
ACCAGGGUCAUCUGUCAC    CU^GA    CCC        UC          CCUG 
    110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
- +
To
Mature sequence

Ami-Mir-15-P2d_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACAUAGAUAUUGGCG -22
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Star sequence

Ami-Mir-15-P2d_3p* (predicted)
mirBase accessionNone
Sequence 
34- CCAGUGUCCUUGUGCUGCCCCA -56
Get sequence