Mir-15-P1c

MirGeneDB ID

Ami-Mir-15-P1c

Family name

MIR-15 (all species)

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-15c

Paralogues

Ami-Mir-15-P1a Ami-Mir-15-P1b Ami-Mir-15-P1d Ami-Mir-15-P2a Ami-Mir-15-P2b Ami-Mir-15-P2c Ami-Mir-15-P2d

Orthologues

Aca-Mir-15-P1c Bta-Mir-15-P1c Cfa-Mir-15-P1c Cin-Mir-15-P1 Cja-Mir-15-P1c Cli-Mir-15-P1c Cmi-Mir-15-P1c Cpi-Mir-15-P1c Cpo-Mir-15-P1c Dno-Mir-15-P1c Eca-Mir-15-P1c Ete-Mir-15-P1c Gga-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Laf-Mir-15-P1c Lch-Mir-15-P1c Loc-Mir-15-P1c Loc-Mir-15-P1c-as Mdo-Mir-15-P1c-v1 Mml-Mir-15-P1c Mmr-Mir-15-P1c Mmu-Mir-15-P1c-v1 Mun-Mir-15-P1c Neu-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Pab-Mir-15-P1c Pbv-Mir-15-P1c Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xtr-Mir-15-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017711293.1: 2725269-2725326 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-15-P1c)

Mir-15-P2c NW_017711293.1: 2724727-2724792 [-] UCSC
Mir-15-P1c NW_017711293.1: 2725269-2725326 [-] UCSC

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

UUUCAACAUUCAUUGGGCUUUGAGGAGAUGUAGCAGCACAUCAUGGUUUGUAGGGACAAGGAGAUACAGACCAUUCUGGGCUGCCUCAUUACCUCAAGGAUAAGACAAGAAAUUGAGC

Get precursor sequence

Structure

        10          20        30        40        50        
UUUCAACAUUCAUUGGG--|       A    UA     A  UC          GGGAC 
                   CUUUGAGG GAUG  GCAGC CA  AUGGUUUGUA     A
                   GGAACUCC UUAC  CGUCG GU  UACCAGACAU     A
CGAGUUAAAGAACAGAAUA^       A    UC     G  CU          AGAGG 
      110       100        90        80        70        60