Mir-15-P1c

MirGeneDB ID

Gga-Mir-15-P1c

Family name

MIR-15 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-15c

Paralogues

Gga-Mir-15-P1a Gga-Mir-15-P1b Gga-Mir-15-P2a Gga-Mir-15-P2b Gga-Mir-15-P2c

Orthologues

Aca-Mir-15-P1c Ami-Mir-15-P1c Bta-Mir-15-P1c Cfa-Mir-15-P1c Cin-Mir-15-P1 Cja-Mir-15-P1c Cli-Mir-15-P1c Cmi-Mir-15-P1c Cpi-Mir-15-P1c Cpo-Mir-15-P1c Dno-Mir-15-P1c Eca-Mir-15-P1c Ete-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Laf-Mir-15-P1c Lch-Mir-15-P1c Loc-Mir-15-P1c Loc-Mir-15-P1c-as Mdo-Mir-15-P1c-v1 Mml-Mir-15-P1c Mmr-Mir-15-P1c Mmu-Mir-15-P1c-v1 Mun-Mir-15-P1c Neu-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Pab-Mir-15-P1c Pbv-Mir-15-P1c Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xtr-Mir-15-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(Gallus_gallus.GRCg6a)

4: 4044608-4044665 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1c)

Mir-15-P2c 4: 4044236-4044300 [-] UCSC Ensembl
Mir-15-P1c 4: 4044608-4044665 [-] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

UGCCAACAUUCAGUGGGCUUUGAGGAGAUGUAGCAGCACAUCAUGGUUUGUAGGGACAAGGAGAUACAGACCAUUCUGGGCUGCCUCAUUACCUCAAGGAUAAGACAAGAAAGUGAGC

Get precursor sequence

Structure

        10          20        30        40        50        
UGCCAACAUUCAGUGGG--|       A    UA     A  UC          GGGAC 
                   CUUUGAGG GAUG  GCAGC CA  AUGGUUUGUA     A
                   GGAACUCC UUAC  CGUCG GU  UACCAGACAU     A
CGAGUGAAAGAACAGAAUA^       A    UC     G  CU          AGAGG 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-15-P1c_5p

mirBase accession

MIMAT0007737

Sequence

0- UAGCAGCACAUCAUGGUUUGUA -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-15c-5p
miRDB: MIMAT0007737

Star sequence

Gga-Mir-15-P1c_3p*

mirBase accession

MIMAT0007738

Sequence

36- CAGACCAUUCUGGGCUGCCUCA -58

Get sequence

Proposed targets

TargetScanVert: gga-miR-15c-3p
miRDB: MIMAT0007738