Mir-15-P1c

MirGeneDB ID

Pbv-Mir-15-P1c

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Burmese python (Python bivittatus)

MiRBase ID

pbv-mir-15b

Paralogues

Pbv-Mir-15-P1b Pbv-Mir-15-P2a Pbv-Mir-15-P2b Pbv-Mir-15-P2c

Orthologues

Aca-Mir-15-P1c Ami-Mir-15-P1c Bta-Mir-15-P1c Cfa-Mir-15-P1c Cin-Mir-15-P1 Cli-Mir-15-P1c Cmi-Mir-15-P1c Cpi-Mir-15-P1c Cpo-Mir-15-P1c Dno-Mir-15-P1c Ete-Mir-15-P1c Gga-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Lch-Mir-15-P1c Loc-Mir-15-P1c Loc-Mir-15-P1c-as Mdo-Mir-15-P1c-v1 Mdo-Mir-15-P1c-v2 Mml-Mir-15-P1c Mmu-Mir-15-P1c-v1 Mmu-Mir-15-P1c-v2 Mmu-Mir-15-P1c-v3 Mun-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xtr-Mir-15-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_000186305.2_Python_molurus_bivittatus)

KE958055.1: 57374-57431 [-]

Clustered miRNAs
(< 50kb from Mir-15-P1c)

Mir-15-P2c KE958055.1: 56683-56743 [-]
Mir-15-P1c KE958055.1: 57374-57431 [-]

Precursor
(pre-Mir +30nt flank)

CUCACUCCGAUGGCCAACCUUGAGGUGGCGUAGCAGCACGACAUGGUUUGUAGAGAAAAGAAGAUACAGACCGUUCUGGGCUGCCUCAUGACCUCAAGGGUUAAGUCCAAGAUAGACG

Get precursor sequence

Structure

        10          20        30        40        50        
CUCACUCCGAUGGCCAA--|        GGCGUA     A  AC          GAGAA 
                   CCUUGAGGU      GCAGC CG  AUGGUUUGUA     A
                   GGAACUCCA      CGUCG GU  UGCCAGACAU     A
GCAGAUAGAACCUGAAUUG^        GUACUC     G  CU          AGAAG 
      110       100        90        80        70        60