MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-15-P1c

Family name MIR-15 (all species)
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-15-P1a  Lch-Mir-15-P1b  Lch-Mir-15-P2a  Lch-Mir-15-P2b  Lch-Mir-15-P2c 
Orthologues Aca-Mir-15-P1c  Ami-Mir-15-P1c  Bta-Mir-15-P1c  Cfa-Mir-15-P1c  Cin-Mir-15-P1  Cja-Mir-15-P1c  Cli-Mir-15-P1c  Cmi-Mir-15-P1c  Cpi-Mir-15-P1c  Cpo-Mir-15-P1c  Dno-Mir-15-P1c  Eca-Mir-15-P1c  Ete-Mir-15-P1c  Gga-Mir-15-P1c  Gja-Mir-15-P1c  Hsa-Mir-15-P1c  Laf-Mir-15-P1c  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Mdo-Mir-15-P1c-v1  Mml-Mir-15-P1c  Mmr-Mir-15-P1c  Mmu-Mir-15-P1c-v1  Mun-Mir-15-P1c  Neu-Mir-15-P1c  Oan-Mir-15-P1c  Ocu-Mir-15-P1c  Pab-Mir-15-P1c  Pbv-Mir-15-P1c  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Sha-Mir-15-P1c  Spt-Mir-15-P1c  Tgu-Mir-15-P1c  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xtr-Mir-15-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(LatCha1_add)		 JH126623.1: 2023205-2023262 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1c)		 Mir-15-P1c JH126623.1: 2023205-2023262 [+] Ensembl
Mir-15-P2c JH126623.1: 2025608-2025670 [+] Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
CAUUUGUUCUUUUCAGGCUUUGAGGAAAUGUAGCAGCACAUCAUGGUUUGUAGGGAUAAGGAGAUACAGACCAUUCUGAGCUGCCUCAGUUCCCCAAGGAAAAGACCACCAUACAGAU
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Structure
        10          20        30        40        50        
CAUUUGUUCUUUUCAGG--|    A    A  UA     A  UC          GGGAU 
                   CUUUG GGAA UG  GCAGC CA  AUGGUUUGUA     A
                   GGAAC CCUU AC  CGUCG GU  UACCAGACAU     A
UAGACAUACCACCAGAAAA^    C    G  UC     A  CU          AGAGG 
      110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Lch-Mir-15-P1c_5p (predicted)
mirBase accessionNone
Sequence 
0- UAGCAGCACAUCAUGGUUUGUA -22
Get sequence
Star sequence

Lch-Mir-15-P1c_3p* (predicted)
mirBase accessionNone
Sequence 
36- CAGACCAUUCUGAGCUGCCUCA -58
Get sequence