MirGeneDB 3.0
MirGeneDB ID

Spt-Mir-15-P1c

Family name MIR-15 (all species)
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-15-P1a  Spt-Mir-15-P1b  Spt-Mir-15-P2a  Spt-Mir-15-P2b  Spt-Mir-15-P2c 
Orthologues Aca-Mir-15-P1c  Ami-Mir-15-P1c  Bta-Mir-15-P1c  Cfa-Mir-15-P1c  Cin-Mir-15-P1  Cja-Mir-15-P1c  Cli-Mir-15-P1c  Cmi-Mir-15-P1c  Cpi-Mir-15-P1c  Cpo-Mir-15-P1c  Dno-Mir-15-P1c  Eca-Mir-15-P1c  Ete-Mir-15-P1c  Gga-Mir-15-P1c  Gja-Mir-15-P1c  Hsa-Mir-15-P1c  Laf-Mir-15-P1c  Lch-Mir-15-P1c  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Mdo-Mir-15-P1c-v1  Mml-Mir-15-P1c  Mmr-Mir-15-P1c  Mmu-Mir-15-P1c-v1  Mun-Mir-15-P1c  Neu-Mir-15-P1c  Oan-Mir-15-P1c  Ocu-Mir-15-P1c  Pab-Mir-15-P1c  Pbv-Mir-15-P1c  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Sha-Mir-15-P1c  Tgu-Mir-15-P1c  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xtr-Mir-15-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)		 QEPC01011901.1: 25029499-25029556 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1c)		 Mir-15-P1c QEPC01011901.1: 25029499-25029556 [+] UCSC Ensembl
Mir-15-P2c QEPC01011901.1: 25030450-25030513 [+] UCSC Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
UUUCAACAUUCAGUGGGCUUUGAGGAGAUGUAGCAGCACAUCAUGGUUUGUAGGGACAAGGAGAUACAGACCAUUCUGGGCUGCCUCAUUACCUCAAGGAUAAAACAAGAAAGUGAGC
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Structure
        10          20        30        40        50        
UUUCAACAUUCAGUGGG--|       A    UA     A  UC          GGGAC 
                   CUUUGAGG GAUG  GCAGC CA  AUGGUUUGUA     A
                   GGAACUCC UUAC  CGUCG GU  UACCAGACAU     A
CGAGUGAAAGAACAAAAUA^       A    UC     G  CU          AGAGG 
      110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Mature sequence

Spt-Mir-15-P1c_5p (predicted)
mirBase accessionNone
Sequence 
0- UAGCAGCACAUCAUGGUUUGUA -22
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Star sequence

Spt-Mir-15-P1c_3p* (predicted)
mirBase accessionNone
Sequence 
36- CAGACCAUUCUGGGCUGCCUCA -58
Get sequence