MirGeneDB 2.1

MirGeneDB ID

Dno-Mir-15-P1c

Family name MIR-15 (all species)
Seed AGCAGCA
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-424
Paralogues Dno-Mir-15-P1a  Dno-Mir-15-P1b  Dno-Mir-15-P1d  Dno-Mir-15-P2a  Dno-Mir-15-P2b  Dno-Mir-15-P2c  Dno-Mir-15-P2d 
Orthologues Aca-Mir-15-P1c  Ami-Mir-15-P1c  Bta-Mir-15-P1c  Cfa-Mir-15-P1c  Cin-Mir-15-P1  Cli-Mir-15-P1c  Cmi-Mir-15-P1c  Cpi-Mir-15-P1c  Cpo-Mir-15-P1c  Ete-Mir-15-P1c  Gga-Mir-15-P1c  Gja-Mir-15-P1c  Hsa-Mir-15-P1c  Lch-Mir-15-P1c  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Mdo-Mir-15-P1c-v1  Mdo-Mir-15-P1c-v2  Mml-Mir-15-P1c  Mmu-Mir-15-P1c-v1  Mmu-Mir-15-P1c-v2  Mmu-Mir-15-P1c-v3  Mun-Mir-15-P1c  Oan-Mir-15-P1c  Ocu-Mir-15-P1c  Pbv-Mir-15-P1c  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Sha-Mir-15-P1c  Spt-Mir-15-P1c  Tgu-Mir-15-P1c  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xtr-Mir-15-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(dasNov3)
JH573198: 462451-462509 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1c)
Mir-15-P1c JH573198: 462451-462509 [+] UCSC Ensembl
Mir-15-P2c JH573198: 462819-462881 [+] UCSC Ensembl
Mir-542-v1 JH573198: 468016-468075 [+] UCSC Ensembl
Mir-542-v2 JH573198: 468017-468074 [+] UCSC Ensembl
Mir-450-P1 JH573198: 468836-468892 [+] UCSC Ensembl
Mir-450-P2 JH573198: 468989-469045 [+] UCSC Ensembl
Mir-450-P3 JH573198: 469158-469215 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAUCCCCCUUUGUUGACUCCGAGGGGAUGCAGCAGCAAUUCAUGUUUUGAAGUGCUCUAAAUGGUUCAAAACGUGAGGCGCUGCUAUACCCCCUCGAGGGGAAAGUGGAAGGUGGGAU
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Structure
        10         20         30        40        50         
UGAUCCCCCUUUGUUGA-   -|      A  C      AA             GUGCUC 
                  CUC CGAGGGG UG AGCAGC  UUCAUGUUUUGAA      \
                  GGG GCUCCCC AU UCGUCG  GAGUGCAAAACUU      U
UAGGGUGGAAGGUGAAAG   A^      C  A      CG             GGUAAA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
To
Mature sequence

Dno-Mir-15-P1c_5p

mirBase accessionMIMAT0047882
Sequence
0- CAGCAGCAAUUCAUGUUUUGAA -22
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Star sequence

Dno-Mir-15-P1c_3p*

mirBase accessionMIMAT0047883
Sequence
37- CAAAACGUGAGGCGCUGCUAUA -59
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