Mir-15-P1c2

MirGeneDB ID

Xla-Mir-15-P1c2

Family name

MIR-15 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-15c-2

Paralogues

Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xla-Mir-15-P1b1 Xla-Mir-15-P1b2 Xla-Mir-15-P1c1 Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xla-Mir-15-P2c1 Xla-Mir-15-P2c2

Orthologues

Aca-Mir-15-P1c Ami-Mir-15-P1c Bta-Mir-15-P1c Cfa-Mir-15-P1c Cin-Mir-15-P1 Cja-Mir-15-P1c Cli-Mir-15-P1c Cmi-Mir-15-P1c Cpi-Mir-15-P1c Cpo-Mir-15-P1c Dno-Mir-15-P1c Eca-Mir-15-P1c Ete-Mir-15-P1c Gga-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Laf-Mir-15-P1c Lch-Mir-15-P1c Loc-Mir-15-P1c Loc-Mir-15-P1c-as Mdo-Mir-15-P1c-v1 Mml-Mir-15-P1c Mmr-Mir-15-P1c Mmu-Mir-15-P1c-v1 Mun-Mir-15-P1c Neu-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Pab-Mir-15-P1c Pbv-Mir-15-P1c Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xtr-Mir-15-P1c

Node of Origin (locus)

X. laevis

Node of Origin (family)

Olfactores

Genome context
(GCF_001663975.1_XLA_v2)

NC_030739.1: 74872534-74872591 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1c2)

Mir-15-P2c2 NC_030739.1: 74871038-74871103 [-] UCSC Ensembl
Mir-15-P1c2 NC_030739.1: 74872534-74872591 [-] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

CUACUAGAUUCUAGAUGCUUUGAGGUGAUCUAGCAGCACAUCAUGGUUUGUAGAAACAAGGAGAUACAGACCAUUCUGAGCUGCCUCUUGACCUCAGAGAAAAGCCAAACAACCCAUG

Get precursor sequence

Structure

        10          20        30        40        50        
CUACUAGAUUCUAGAUG--|        GAUCUA     A  UC          GAAAC 
                   CUUUGAGGU      GCAGC CA  AUGGUUUGUA     A
                   GAGACUCCA      CGUCG GU  UACCAGACAU     A
GUACCCAACAAACCGAAAA^        GUUCUC     A  CU          AGAGG 
      110       100        90        80        70        60