Mir-15-P1b2

MirGeneDB ID

Xla-Mir-15-P1b2

Family name

MIR-15 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-15b

Paralogues

Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xla-Mir-15-P1b1 Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xla-Mir-15-P2c1 Xla-Mir-15-P2c2

Orthologues

Aca-Mir-15-P1b Ami-Mir-15-P1b Bta-Mir-15-P1b Cfa-Mir-15-P1b Cin-Mir-15-P1 Cja-Mir-15-P1b Cli-Mir-15-P1b Cmi-Mir-15-P1b Cpi-Mir-15-P1b Cpo-Mir-15-P1b Dno-Mir-15-P1b Dre-Mir-15-P1b Eca-Mir-15-P1b Ete-Mir-15-P1b Gga-Mir-15-P1b Gja-Mir-15-P1b Gmo-Mir-15-P1b Hsa-Mir-15-P1b Laf-Mir-15-P1b Lch-Mir-15-P1b Loc-Mir-15-P1b Mal-Mir-15-P1b Mml-Mir-15-P1b Mmr-Mir-15-P1b Mmu-Mir-15-P1b Mun-Mir-15-P1b Oan-Mir-15-P1b Ocu-Mir-15-P1b Pab-Mir-15-P1b Pbv-Mir-15-P1b Rno-Mir-15-P1b Sha-Mir-15-P1b Spt-Mir-15-P1b Sto-Mir-15-P1b Tgu-Mir-15-P1b Tni-Mir-15-P1b Xtr-Mir-15-P1b

Node of Origin (locus)

X. laevis

Node of Origin (family)

Olfactores

Genome context
(GCF_001663975.1_XLA_v2)

NC_030733.1: 95597674-95597731 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1b2)

Mir-15-P2b2 NC_030733.1: 95597523-95597582 [-] UCSC Ensembl
Mir-15-P1b2 NC_030733.1: 95597674-95597731 [-] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

GAGAUUGUUACUGAAUGUCCUAAAGAAGUGUAGCAGCACAUCAUGAUUUGCAUGCUGUAUUAGAUUCUAAUCAUUAUUUGCUGCUUCAUGAUAUUGGGGAAAAUCUAUCACUUUGUGC

Get precursor sequence

Structure

        10          20        30        40        50        
GAGAUUGUUACUGAAUG--|     AGAA   U       C  C      UGCAUGCUG 
                   UCCUAA    GUG AGCAGCA AU AUGAUU         U
                   GGGGUU    UAC UCGUCGU UA UACUAA         A
CGUGUUUCACUAUCUAAAA^     AUAG   U       U  U      UCUUAGAUU 
      110       100        90        80        70        60