Mir-15-P1b

MirGeneDB ID

Gja-Mir-15-P1b

Family name

MIR-15 (all species)

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-15-P1a Gja-Mir-15-P1c Gja-Mir-15-P2a Gja-Mir-15-P2b Gja-Mir-15-P2c Gja-Mir-15-P2d

Orthologues

Aca-Mir-15-P1b Ami-Mir-15-P1b Bta-Mir-15-P1b Cfa-Mir-15-P1b Cin-Mir-15-P1 Cja-Mir-15-P1b Cli-Mir-15-P1b Cmi-Mir-15-P1b Cpi-Mir-15-P1b Cpo-Mir-15-P1b Dno-Mir-15-P1b Dre-Mir-15-P1b Eca-Mir-15-P1b Ete-Mir-15-P1b Gga-Mir-15-P1b Gmo-Mir-15-P1b Hsa-Mir-15-P1b Laf-Mir-15-P1b Lch-Mir-15-P1b Loc-Mir-15-P1b Mal-Mir-15-P1b Mml-Mir-15-P1b Mmr-Mir-15-P1b Mmu-Mir-15-P1b Mun-Mir-15-P1b Oan-Mir-15-P1b Ocu-Mir-15-P1b Pab-Mir-15-P1b Pbv-Mir-15-P1b Rno-Mir-15-P1b Sha-Mir-15-P1b Spt-Mir-15-P1b Sto-Mir-15-P1b Tgu-Mir-15-P1b Tni-Mir-15-P1b Xla-Mir-15-P1b1 Xla-Mir-15-P1b2 Xtr-Mir-15-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015163604.1: 1350423-1350482 [+]

Clustered miRNAs
(< 50kb from Mir-15-P1b)

Mir-15-P1b NW_015163604.1: 1350423-1350482 [+]
Mir-15-P2b NW_015163604.1: 1350585-1350648 [+]

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

AACCUUGUGCUUGGAAGCCUUAAGGUACCCUAGCAGCACAUCAUGAAUUGUAUGUCAUAGUAAAUAUGCAAGUCAUUAUUUGCUGCUUUAGAAUUUUAAGGAAGAUAAUCACUUGCAGUU

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Structure

        10          20        30        40        50         
AACCUUGUGCUUGGAAG--|        ACCCU       C  C    A     UGUCAU 
                   CCUUAAGGU     AGCAGCA AU AUGA UUGUA      A
                   GGAAUUUUA     UCGUCGU UA UACU AACGU      G
UUGACGUUCACUAAUAGAA^        AGAUU       U  U    G     AUAAAU 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

UGUG in loop

Tissue expression

To

Mature sequence

Gja-Mir-15-P1b_5p

mirBase accession

None

Sequence

0- UAGCAGCACAUCAUGAAUUGUA -22

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Star sequence

Gja-Mir-15-P1b_3p*

mirBase accession

None

Sequence

38- CAAGUCAUUAUUUGCUGCUUUA -60

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