Mir-15-P1b

MirGeneDB ID

Sto-Mir-15-P1b

Family name

MIR-15 (all species)

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-15-P1a Sto-Mir-15-P1d Sto-Mir-15-P2a Sto-Mir-15-P2b Sto-Mir-15-P2d

Orthologues

Aca-Mir-15-P1b Ami-Mir-15-P1b Bta-Mir-15-P1b Cfa-Mir-15-P1b Cin-Mir-15-P1 Cja-Mir-15-P1b Cli-Mir-15-P1b Cmi-Mir-15-P1b Cpi-Mir-15-P1b Cpo-Mir-15-P1b Dno-Mir-15-P1b Dre-Mir-15-P1b Eca-Mir-15-P1b Ete-Mir-15-P1b Gga-Mir-15-P1b Gja-Mir-15-P1b Gmo-Mir-15-P1b Hsa-Mir-15-P1b Laf-Mir-15-P1b Lch-Mir-15-P1b Loc-Mir-15-P1b Mal-Mir-15-P1b Mml-Mir-15-P1b Mmr-Mir-15-P1b Mmu-Mir-15-P1b Mun-Mir-15-P1b Oan-Mir-15-P1b Ocu-Mir-15-P1b Pab-Mir-15-P1b Pbv-Mir-15-P1b Rno-Mir-15-P1b Sha-Mir-15-P1b Spt-Mir-15-P1b Tgu-Mir-15-P1b Tni-Mir-15-P1b Xla-Mir-15-P1b1 Xla-Mir-15-P1b2 Xtr-Mir-15-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_003427355_STO_add)

BFAA01000434.1: 79932-79992 [-]

Clustered miRNAs
(< 50kb from Mir-15-P1b)

Mir-15-P2b BFAA01000434.1: 79754-79810 [-]
Mir-15-P1b BFAA01000434.1: 79932-79992 [-]

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

CAGAGUUUUUCCUGUUACCUUAUAUUGCUGUAGCAGCACAUCAUGGUUUGCAGGGCUGCUUUCAUAACUCAAGCCAUUAUUUGCUGCUGUAGUGCUUUAAGGCUAAACCAGAAAAAAAAUU

Get precursor sequence

Structure

        10          20        30        40        50          
CAGAGUUUUUCCUGUUA--|    UAU             C  C        CAGGGCUGC 
                   CCUUA   UGCUGUAGCAGCA AU AUGGUUUG         \
                   GGAAU   GUGAUGUCGUCGU UA UACCGAAC         U
UUAAAAAAAAGACCAAAUC^    UUC             U  U        UCAAUACUU 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

Tissue expression

To

Mature sequence

Sto-Mir-15-P1b_5p

mirBase accession

None

Sequence

0- UAGCAGCACAUCAUGGUUUGCA -22

Get sequence

Star sequence

Sto-Mir-15-P1b_3p*

mirBase accession

None

Sequence

39- CAAGCCAUUAUUUGCUGCUGUA -61

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