Mir-15-P2b

MirGeneDB ID

Sto-Mir-15-P2b

Family name

MIR-15 (all species)

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-15-P1a Sto-Mir-15-P1b Sto-Mir-15-P1d Sto-Mir-15-P2a Sto-Mir-15-P2d

Orthologues

Aca-Mir-15-P2b Ami-Mir-15-P2b Bta-Mir-15-P2b Cfa-Mir-15-P2b Cin-Mir-15-P2 Cja-Mir-15-P2b Cli-Mir-15-P2b Cmi-Mir-15-P2b Cpi-Mir-15-P2b Cpo-Mir-15-P2b Dno-Mir-15-P2b Dre-Mir-15-P2b Eca-Mir-15-P2b Ete-Mir-15-P2b Gga-Mir-15-P2b Gja-Mir-15-P2b Gmo-Mir-15-P2b Hsa-Mir-15-P2b Laf-Mir-15-P2b Lch-Mir-15-P2b Loc-Mir-15-P2b Mal-Mir-15-P2b Mdo-Mir-15-P2b Mml-Mir-15-P2b Mmr-Mir-15-P2b Mmu-Mir-15-P2b Mun-Mir-15-P2b Neu-Mir-15-P2b Oan-Mir-15-P2b Ocu-Mir-15-P2b Pab-Mir-15-P2b Pbv-Mir-15-P2b Rno-Mir-15-P2b Sha-Mir-15-P2b Spt-Mir-15-P2b Tgu-Mir-15-P2b Tni-Mir-15-P2b Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xtr-Mir-15-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_003427355_STO_add)

BFAA01000434.1: 79754-79810 [-]

Clustered miRNAs
(< 50kb from Mir-15-P2b)

Mir-15-P2b BFAA01000434.1: 79754-79810 [-]
Mir-15-P1b BFAA01000434.1: 79932-79992 [-]

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

GACCUGUUAAUGAAAAUGCCAGUUACACUUUAGCAGCACGUAAAUAUUGGCGUGGCAAUAAUCGCCAAUAUUACUUGUGCUGCUGCAGCGUGACAUGGUUUUAUCACCCGCCAGAUC

Get precursor sequence

Structure

        10         20         30        40         50       
GACCUGUUAAUGAAAAU-    -     A  U          UA-|         UGGC 
                  GCCA GUUAC CU UAGCAGCACG   AAUAUUGGCG    A
                  UGGU CAGUG GA GUCGUCGUGU   UUAUAACCGC    A
CUAGACCGCCCACUAUUU    A     C  C          UCA^         UAAU 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Sto-Mir-15-P2b_5p

mirBase accession

None

Sequence

0- UAGCAGCACGUAAAUAUUGGCG -22

Get sequence

Star sequence

Sto-Mir-15-P2b_3p*

mirBase accession

None

Sequence

34- CCAAUAUUACUUGUGCUGCUGCA -57

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