MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-15-P1d

Family name MIR-15 (all species)
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-15-P1a  Sto-Mir-15-P1b  Sto-Mir-15-P2a  Sto-Mir-15-P2b  Sto-Mir-15-P2d 
Orthologues Ami-Mir-15-P1d  Bta-Mir-15-P1d  Cfa-Mir-15-P1d  Cin-Mir-15-P1  Cja-Mir-15-P1d  Cpo-Mir-15-P1d  Dno-Mir-15-P1d  Dre-Mir-15-P1d  Eca-Mir-15-P1d  Ete-Mir-15-P1d  Hsa-Mir-15-P1d  Laf-Mir-15-P1d  Loc-Mir-15-P1d  Mdo-Mir-15-P1d  Mml-Mir-15-P1d  Mmr-Mir-15-P1d  Mmu-Mir-15-P1d  Neu-Mir-15-P1d  Oan-Mir-15-P1d  Ocu-Mir-15-P1d  Pab-Mir-15-P1d  Rno-Mir-15-P1d  Sha-Mir-15-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_003427355_STO_add)		 BFAA01004470.1: 237392-237448 [+]
Clustered miRNAs
(< 50kb from Mir-15-P1d)		 Mir-15-P1d BFAA01004470.1: 237392-237448 [+]
Mir-15-P2d BFAA01004470.1: 249794-249856 [+]
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
ACCUUCCUCCCAAAACACCUGCAUUCAGCACAGCAGCACACCAUGGUUUGCAUGUAUUGAAUAUCCAAACCGUUGUGUGCUGUUCUGGGGAGUGUGGGGAAUUCUGUCUGGUAGUGG
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Structure
        10          20        30        40        50        
ACCUUCCUCCCAAAACA--| UG     AG  C          C        CAUGUAU 
                   CC  CAUUC  CA AGCAGCACAC AUGGUUUG       \
                   GG  GUGAG  GU UUGUCGUGUG UGCCAAAC       U
GGUGAUGGUCUGUCUUAAG^ GU     GG  C          U        CUAUAAG 
     110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsUGUG in loop
Tissue expression
- +
To
Mature sequence

Sto-Mir-15-P1d_5p
mirBase accessionNone
Sequence 
0- CAGCAGCACACCAUGGUUUGCA -22
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Star sequence

Sto-Mir-15-P1d_3p*
mirBase accessionNone
Sequence 
35- CAAACCGUUGUGUGCUGUUCUG -57
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