Mir-15-P1d

MirGeneDB ID

Mml-Mir-15-P1d

Family name

MIR-15 (all species)

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-497

Paralogues

Mml-Mir-15-P1a Mml-Mir-15-P1b Mml-Mir-15-P1c Mml-Mir-15-P2a Mml-Mir-15-P2b Mml-Mir-15-P2c Mml-Mir-15-P2d

Orthologues

Ami-Mir-15-P1d Bta-Mir-15-P1d Cfa-Mir-15-P1d Cin-Mir-15-P1 Cja-Mir-15-P1d Cpo-Mir-15-P1d Dno-Mir-15-P1d Dre-Mir-15-P1d Eca-Mir-15-P1d Ete-Mir-15-P1d Hsa-Mir-15-P1d Laf-Mir-15-P1d Loc-Mir-15-P1d Mdo-Mir-15-P1d Mmr-Mir-15-P1d Mmu-Mir-15-P1d Neu-Mir-15-P1d Oan-Mir-15-P1d Ocu-Mir-15-P1d Pab-Mir-15-P1d Rno-Mir-15-P1d Sha-Mir-15-P1d Sto-Mir-15-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014351.1: 6775784-6775845 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1d)

Mir-15-P2d CM014351.1: 6775472-6775532 [-] UCSC Ensembl
Mir-15-P1d CM014351.1: 6775784-6775845 [-] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

UCUCAGCCCACCCCGGUCCUGCUCCCGCCCCAGCAGCACACUGUGGUUUGUACGGCACUGUGGCCACGUCCAAACCACACUGUGGUGUUAGAGCGAGGGUGGGGGAGGCACCGCCGAGGCUU

Get precursor sequence

Structure

        10          20        30        40        50        60
UCUCAGCCCACCCCGGU--| UG   C   CCC    G    C         UACGGCACU 
                   CC  CUC CGC   AGCA CACA UGUGGUUUG         G
                   GG  GGG GCG   UUGU GUGU ACACCAAAC         U
UUCGGAGCCGCCACGGAGG^ GU   A   AGA    G    C         CUGCACCGG 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-15-P1d_5p

mirBase accession

MIMAT0006359

Sequence

0- CAGCAGCACACUGUGGUUUGUA -22

Get sequence

Proposed targets

TargetScanVert: mml-miR-497-5p

Star sequence

Mml-Mir-15-P1d_3p*

mirBase accession

MIMAT0026887

Sequence

40- CAAACCACACUGUGGUGUUAGA -62

Get sequence

Proposed targets

TargetScanVert: mml-miR-497-3p