MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-15-P1d

Family name MIR-15 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-497
Paralogues Rno-Mir-15-P1a  Rno-Mir-15-P1b  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Rno-Mir-15-P2a  Rno-Mir-15-P2b  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4  Rno-Mir-15-P2d 
Orthologues Ami-Mir-15-P1d  Bta-Mir-15-P1d  Cfa-Mir-15-P1d  Cin-Mir-15-P1  Cja-Mir-15-P1d  Cpo-Mir-15-P1d  Dno-Mir-15-P1d  Dre-Mir-15-P1d  Eca-Mir-15-P1d  Ete-Mir-15-P1d  Hsa-Mir-15-P1d  Laf-Mir-15-P1d  Loc-Mir-15-P1d  Mdo-Mir-15-P1d  Mml-Mir-15-P1d  Mmr-Mir-15-P1d  Mmu-Mir-15-P1d  Neu-Mir-15-P1d  Oan-Mir-15-P1d  Ocu-Mir-15-P1d  Pab-Mir-15-P1d  Sha-Mir-15-P1d  Sto-Mir-15-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(rn6)		 chr10: 56844978-56845039 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1d)		 Mir-15-P1d chr10: 56844978-56845039 [+] UCSC Ensembl
Mir-15-P2d chr10: 56845315-56845375 [+] UCSC Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
UCUCGACACACCCCAGUCCUGCUCCCGCCCCAGCAGCACACUGUGGUUUGUACGGCACUGUGGCCACGUCCAAACCACACUGUGGUGUUAGAGCGAGGGUAUGGGAGGCACCGCUGAGGCCU
Get precursor sequence
Structure
        10          20        30        40        50        60
UCUCGACACACCCCAGU-  -|    C   CCC    G    C         UACGGCACU 
                  CC UGCUC CGC   AGCA CACA UGUGGUUUG         G
                  GG AUGGG GCG   UUGU GUGU ACACCAAAC         U
UCCGGAGUCGCCACGGAG  U^    A   AGA    G    C         CUGCACCGG 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
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Mature sequence

Rno-Mir-15-P1d_5p
mirBase accessionMIMAT0003383
Sequence 
0- CAGCAGCACACUGUGGUUUGUA -22
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Proposed targets microrna.org: MIMAT0003383
TargetScanVert: rno-miR-497-5p
miRDB: MIMAT0003383
Star sequence

Rno-Mir-15-P1d_3p*
mirBase accessionMIMAT0017230
Sequence 
40- CAAACCACACUGUGGUGUUAGA -62
Get sequence
Proposed targets TargetScanVert: rno-miR-497-3p
miRDB: MIMAT0017230