Mir-15-P1a

MirGeneDB ID

Rno-Mir-15-P1a

Family name

MIR-15 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-15a

Paralogues

Rno-Mir-15-P1b Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Rno-Mir-15-P1d Rno-Mir-15-P2a Rno-Mir-15-P2b Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Rno-Mir-15-P2d

Orthologues

Ami-Mir-15-P1a Bta-Mir-15-P1a Cfa-Mir-15-P1a Cin-Mir-15-P1 Cja-Mir-15-P1a Cli-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dno-Mir-15-P1a Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Eca-Mir-15-P1a Ete-Mir-15-P1a Gga-Mir-15-P1a Gja-Mir-15-P1a Gmo-Mir-15-P1a2 Hsa-Mir-15-P1a Laf-Mir-15-P1a Lch-Mir-15-P1a Loc-Mir-15-P1a Mal-Mir-15-P1a2 Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmr-Mir-15-P1a Mmu-Mir-15-P1a Mun-Mir-15-P1a Neu-Mir-15-P1a Oan-Mir-15-P1a Ocu-Mir-15-P1a Pab-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Sto-Mir-15-P1a Tgu-Mir-15-P1a Tni-Mir-15-P1a2 Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xtr-Mir-15-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(rn6)

901866519: 202-260 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1a)

Mir-15-P1a 901866519: 202-260 [+] UCSC Ensembl
Mir-15-P2a 901866519: 341-405 [+] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

AGUUUUCAAAAACAAAACCUUGGAGUAAAGUAGCAGCACAUAAUGGUUUGUGGAUUUUGAAAAGGUGCAGGCCAUAUUGUGCUGCCUCAAAAUACAAGGAUCUGAUCUUCUGAAGAAAG

Get precursor sequence

Structure

        10           20        30        40        50         
AGUUUUCAAAAACAAAA---|    GAGUAAAGUA        UA         GGAUUUU 
                    CCUUG          GCAGCACA  AUGGUUUGU       \
                    GGAAC          CGUCGUGU  UACCGGACG       G
GAAAGAAGUCUUCUAGUCUA^    AUAAAACUC-        UA         UGGAAAA 
       110       100        90         80        70        60

Deep sequencing

Go to detailed chart

Comment

Not in assembly but in trace archive.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-15-P1a_5p

mirBase accession

MIMAT0035728

Sequence

0- UAGCAGCACAUAAUGGUUUGUG -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-15a-5p
miRDB: MIMAT0035728

Star sequence

Rno-Mir-15-P1a_3p*

mirBase accession

MIMAT0035729

Sequence

37- CAGGCCAUAUUGUGCUGCCUCA -59

Get sequence

Proposed targets

TargetScanVert: rno-miR-15a-3p
miRDB: MIMAT0035729