Mir-15-P1a

MirGeneDB ID

Sto-Mir-15-P1a

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-15-P1b Sto-Mir-15-P1d Sto-Mir-15-P2a Sto-Mir-15-P2b Sto-Mir-15-P2d

Orthologues

Ami-Mir-15-P1a Bta-Mir-15-P1a Cfa-Mir-15-P1a Cin-Mir-15-P1 Cli-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dno-Mir-15-P1a Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Ete-Mir-15-P1a Gga-Mir-15-P1a Gja-Mir-15-P1a Gmo-Mir-15-P1a2 Hsa-Mir-15-P1a Lch-Mir-15-P1a Loc-Mir-15-P1a Mal-Mir-15-P1a2 Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmu-Mir-15-P1a Mun-Mir-15-P1a Oan-Mir-15-P1a Ocu-Mir-15-P1a Rno-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Tgu-Mir-15-P1a Tni-Mir-15-P1a2 Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xtr-Mir-15-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_003427355_STO_add)

BFAA01008186.1: 126152-126210 [+]

Precursor
(pre-Mir +30nt flank)

AAAAUCCAAUGUGGAGAUCCUGUGGUGAACUAGCAGCACAUAAUGGUUUGUGAGUUGUACGGAGAUGCAGGCCACAUUGUGCUGCCACAUGAACACAGGAGUAUAAUCUGAUUUCACUA

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Structure

        10          20        30        40        50         
AAAAUCCAAUGUGGAGA--|      GUGAACUA        UAA        GAGUUGU 
                   UCCUGUG        GCAGCACA   UGGUUUGU       \
                   AGGACAC        CGUCGUGU   ACCGGACG       A
AUCACUUUAGUCUAAUAUG^      AAGUACAC        UAC        UAGAGGC 
       110       100        90        80        70        60

Deep sequencing

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Comment

There is a second Dicer cut +1 on both arms.

3' NTU

Motifs

Tissue expression

To

Mature sequence

Sto-Mir-15-P1a_5p

mirBase accession

None

Sequence

0- UAGCAGCACAUAAUGGUUUGUG -22

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Star sequence

Sto-Mir-15-P1a_3p*

mirBase accession

None

Sequence

37- CAGGCCACAUUGUGCUGCCACA -59

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