Mir-15-P1a1

MirGeneDB ID

Dre-Mir-15-P1a1

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-15a-1

Paralogues

Dre-Mir-15-P1a2 Dre-Mir-15-P1b Dre-Mir-15-P1d Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Dre-Mir-15-P2b Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Dre-Mir-15-P2d

Orthologues

Ami-Mir-15-P1a Bta-Mir-15-P1a Cfa-Mir-15-P1a Cin-Mir-15-P1 Cli-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dno-Mir-15-P1a Ete-Mir-15-P1a Gga-Mir-15-P1a Gja-Mir-15-P1a Hsa-Mir-15-P1a Lch-Mir-15-P1a Loc-Mir-15-P1a Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmu-Mir-15-P1a Mun-Mir-15-P1a Oan-Mir-15-P1a Ocu-Mir-15-P1a Rno-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Sto-Mir-15-P1a Tgu-Mir-15-P1a Xtr-Mir-15-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Olfactores

Genome context
(danRer11)

chr1: 46722633-46722692 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1a1)

Mir-15-P2a1 chr1: 46722416-46722480 [-] UCSC Ensembl
Mir-15-P1a1 chr1: 46722633-46722692 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCGCGCUCUGUGCGGGGCCUGUCGGUACUGUAGCAGCACAGAAUGGUUUGUGAGUUAUAACGGGGGUGCAGGCCGUACUGUGCUGCGGCAACAACGACAGGACAGACGCGCACUUCCCAU

Get precursor sequence

Structure

        10          20        30        40        50         
GCGCGCUCUGUGCGGGG--|      GUAC   A         A         GAGUUAU 
                   CCUGUCG    UGU GCAGCACAG AUGGUUUGU       A
                   GGACAGC    ACG CGUCGUGUC UGCCGGACG       A
UACCCUUCACGCGCAGACA^      AACA   G         A         UGGGGGC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-15-P1a1_5p

mirBase accession

MIMAT0001772

Sequence

0- UAGCAGCACAGAAUGGUUUGUG -22

Get sequence

Proposed targets

TargetScanFish: dre-miR-15a

Star sequence

Dre-Mir-15-P1a1_3p*

mirBase accession

MIMAT0003395

Sequence

38- CAGGCCGUACUGUGCUGCGGCA -60

Get sequence