Mir-15-P1a

MirGeneDB ID

Xtr-Mir-15-P1a

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-15a

Paralogues

Xtr-Mir-15-P1b Xtr-Mir-15-P1c Xtr-Mir-15-P2a Xtr-Mir-15-P2b Xtr-Mir-15-P2c

Orthologues

Ami-Mir-15-P1a Bta-Mir-15-P1a Cfa-Mir-15-P1a Cin-Mir-15-P1 Cli-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dno-Mir-15-P1a Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Ete-Mir-15-P1a Gga-Mir-15-P1a Gja-Mir-15-P1a Gmo-Mir-15-P1a2 Hsa-Mir-15-P1a Lch-Mir-15-P1a Loc-Mir-15-P1a Mal-Mir-15-P1a2 Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmu-Mir-15-P1a Mun-Mir-15-P1a Oan-Mir-15-P1a Ocu-Mir-15-P1a Rno-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Sto-Mir-15-P1a Tgu-Mir-15-P1a Tni-Mir-15-P1a2 Xla-Mir-15-P1a3 Xla-Mir-15-P1a4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(xenTro9_add)

chr2: 146575536-146575594 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1a)

Mir-15-P2a chr2: 146575403-146575458 [-] UCSC Ensembl
Mir-15-P1a chr2: 146575536-146575594 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAAGGUGGUUAAAAUGACCUUGACGUAAAGUAGCAGCACAUAAUGGUUUGUGGGUUACACAGAGGUGCAGGCCAUACUGUGCUGCCGCCAAAACACAAGGCUUUCCUCCUCUCAAGUGG

Get precursor sequence

Structure

        10          20        30        40        50         
AAAGGUGGUUAAAAUGA--|    ACGUAAA UA        UA         GGGUUAC 
                   CCUUG       G  GCAGCACA  AUGGUUUGU       \
                   GGAAC       C  CGUCGUGU  UACCGGACG       A
GGUGAACUCUCCUCCUUUC^    ACAAAAC GC        CA         UGGAGAC 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Em	Em	Em	Em	He

Mature sequence

Xtr-Mir-15-P1a_5p

mirBase accession

MIMAT0003560

Sequence

0- UAGCAGCACAUAAUGGUUUGUG -22

Get sequence

Proposed targets

TargetScanVert: xtr-miR-15a

Star sequence

Xtr-Mir-15-P1a_3p*

mirBase accession

None

Sequence

37- CAGGCCAUACUGUGCUGCCGCC -59

Get sequence