Mir-15-P1a

MirGeneDB ID

Ete-Mir-15-P1a

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Lesser hedgehog tenrec (Echinops telfairi)

MiRBase ID

Paralogues

Ete-Mir-15-P1b Ete-Mir-15-P1c Ete-Mir-15-P1d Ete-Mir-15-P2a Ete-Mir-15-P2b Ete-Mir-15-P2c Ete-Mir-15-P2d

Orthologues

Ami-Mir-15-P1a Bta-Mir-15-P1a Cfa-Mir-15-P1a Cin-Mir-15-P1 Cli-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dno-Mir-15-P1a Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Gga-Mir-15-P1a Gja-Mir-15-P1a Gmo-Mir-15-P1a2 Hsa-Mir-15-P1a Lch-Mir-15-P1a Loc-Mir-15-P1a Mal-Mir-15-P1a2 Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmu-Mir-15-P1a Mun-Mir-15-P1a Oan-Mir-15-P1a Ocu-Mir-15-P1a Rno-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Sto-Mir-15-P1a Tgu-Mir-15-P1a Tni-Mir-15-P1a2 Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xtr-Mir-15-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(echTel2)

JH980311: 7342911-7342969 [+] UCSC

Precursor
(pre-Mir +30nt flank)

UUUUUAAAAAAGCAAAACCUUGGAGUAACGUAGCAGCACAUAAUGGUUUGUGAAUUUUGAAAAGGUGCAGGCCAUAUUGUGCUGCCUCAAGAAUACAAGGAUCUGAUCUUCUGAAGAGA

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Structure

        10          20        30        40        50         
UUUUUAAAAAAGCAAAA--|    GAGUAACGUA        UA         GAAUUUU 
                   CCUUG          GCAGCACA  AUGGUUUGU       \
                   GGAAC          CGUCGUGU  UACCGGACG       G
AGAGAAGUCUUCUAGUCUA^    AUAAGAACUC        UA         UGGAAAA 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

To

Mature sequence

Ete-Mir-15-P1a_5p

mirBase accession

None

Sequence

0- UAGCAGCACAUAAUGGUUUGUG -22

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Star sequence

Ete-Mir-15-P1a_3p*

mirBase accession

None

Sequence

37- CAGGCCAUAUUGUGCUGCCUCA -59

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