Mir-15-P1a

MirGeneDB ID

Hsa-Mir-15-P1a

Family name

MIR-15 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-15a

Paralogues

Hsa-Mir-15-P1b Hsa-Mir-15-P1c Hsa-Mir-15-P1d Hsa-Mir-15-P2a Hsa-Mir-15-P2b Hsa-Mir-15-P2c Hsa-Mir-15-P2d

Orthologues

Ami-Mir-15-P1a Bta-Mir-15-P1a Cfa-Mir-15-P1a Cin-Mir-15-P1 Cja-Mir-15-P1a Cli-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dno-Mir-15-P1a Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Eca-Mir-15-P1a Ete-Mir-15-P1a Gga-Mir-15-P1a Gja-Mir-15-P1a Gmo-Mir-15-P1a2 Laf-Mir-15-P1a Lch-Mir-15-P1a Loc-Mir-15-P1a Mal-Mir-15-P1a2 Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmr-Mir-15-P1a Mmu-Mir-15-P1a Mun-Mir-15-P1a Neu-Mir-15-P1a Oan-Mir-15-P1a Ocu-Mir-15-P1a Pab-Mir-15-P1a Rno-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Sto-Mir-15-P1a Tgu-Mir-15-P1a Tni-Mir-15-P1a2 Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xtr-Mir-15-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(hg38)

chr13: 50049130-50049188 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1a)

Mir-15-P2a chr13: 50048984-50049048 [-] UCSC Ensembl
Mir-15-P1a chr13: 50049130-50049188 [-] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

GUUUAAAAAAAAUAAAACCUUGGAGUAAAGUAGCAGCACAUAAUGGUUUGUGGAUUUUGAAAAGGUGCAGGCCAUAUUGUGCUGCCUCAAAAAUACAAGGAUCUGAUCUUCUGAAGAAA

Get precursor sequence

Structure

        10          20        30        40        50         
GUUUAAAAAAAAUAAAA--|    GAGUAAAGUA        UA         GGAUUUU 
                   CCUUG          GCAGCACA  AUGGUUUGU       \
                   GGAAC          CGUCGUGU  UACCGGACG       G
AAAGAAGUCUUCUAGUCUA^    AUAAAAACUC        UA         UGGAAAA 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-15-P1a_5p

mirBase accession

MIMAT0000068

Sequence

0- UAGCAGCACAUAAUGGUUUGUG -22

Get sequence

Proposed targets

microrna.org: MIMAT0000068
TargetScanVert: hsa-miR-15a-5p
TargetMiner: hsa-miR-15a-5p
miRDB: MIMAT0000068

Star sequence

Hsa-Mir-15-P1a_3p*

mirBase accession

MIMAT0004488

Sequence

37- CAGGCCAUAUUGUGCUGCCUCA -59

Get sequence

Proposed targets

microrna.org: MIMAT0004488
TargetScanVert: hsa-miR-15a-3p
TargetMiner: hsa-miR-15a-3p
miRDB: MIMAT0004488