MirGeneDB ID | Lch-Mir-15-P1a |
---|---|
Family name | MIR-15 (all species) |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-15-P1b Lch-Mir-15-P1c Lch-Mir-15-P2a Lch-Mir-15-P2b Lch-Mir-15-P2c |
Orthologues | Ami-Mir-15-P1a Bta-Mir-15-P1a Cfa-Mir-15-P1a Cin-Mir-15-P1 Cja-Mir-15-P1a Cli-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dno-Mir-15-P1a Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Eca-Mir-15-P1a Ete-Mir-15-P1a Gga-Mir-15-P1a Gja-Mir-15-P1a Gmo-Mir-15-P1a2 Hsa-Mir-15-P1a Laf-Mir-15-P1a Loc-Mir-15-P1a Mal-Mir-15-P1a2 Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmr-Mir-15-P1a Mmu-Mir-15-P1a Mun-Mir-15-P1a Neu-Mir-15-P1a Oan-Mir-15-P1a Ocu-Mir-15-P1a Pab-Mir-15-P1a Rno-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Sto-Mir-15-P1a Tgu-Mir-15-P1a Tni-Mir-15-P1a2 Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xtr-Mir-15-P1a |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Olfactores |
Genome context (LatCha1_add) |
JH127182.1: 914023-914083 [-] Ensembl |
Clustered miRNAs (< 50kb from Mir-15-P1a) |
Mir-15-P2a
JH127182.1: 910222-910287 [-]
Ensembl
Mir-15-P1a JH127182.1: 914023-914083 [-] Ensembl |
Seed | AGCAGCA |
Precursor (pre-Mir +30nt flank) |
GCACCUUUUGAAAGAUACCUUGGAGCACUGUAGCAGCACAUAAUGGUUUGUGAGUUAUAUAGAAUUAUGCAGGCCAUGUUGUGCUGCUGCAAAAAUACAAGGAUUUAAUCUACUCUGAAAAGet precursor sequence |
Structure | 10 20 30 40 50 GCACCUUUUGAAAGAUA--| GAGCAC UA GAGUUAUA CCUUG UGUAGCAGCACA AUGGUUUGU \ GGAAC ACGUCGUCGUGU UACCGGACG U AAAAGUCUCAUCUAAUUUA^ AUAAAA UG UAUUAAGA . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Mature sequence | Lch-Mir-15-P1a_5p (predicted) |
mirBase accession | None |
Sequence |
0- UAGCAGCACAUAAUGGUUUGUG -22
Get sequence
|
Star sequence | Lch-Mir-15-P1a_3p* (predicted) |
mirBase accession | None |
Sequence |
39- CAGGCCAUGUUGUGCUGCUGCA -61
Get sequence
|