MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-15-P1a2

Family name MIR-15 (all species)
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-15a
Paralogues Tni-Mir-15-P1b  Tni-Mir-15-P2a2  Tni-Mir-15-P2b 
Orthologues Ami-Mir-15-P1a  Bta-Mir-15-P1a  Cfa-Mir-15-P1a  Cin-Mir-15-P1  Cja-Mir-15-P1a  Cli-Mir-15-P1a  Cmi-Mir-15-P1a  Cpi-Mir-15-P1a  Cpo-Mir-15-P1a  Dno-Mir-15-P1a  Dre-Mir-15-P1a2  Eca-Mir-15-P1a  Ete-Mir-15-P1a  Gga-Mir-15-P1a  Gja-Mir-15-P1a  Gmo-Mir-15-P1a2  Hsa-Mir-15-P1a  Laf-Mir-15-P1a  Lch-Mir-15-P1a  Loc-Mir-15-P1a  Mal-Mir-15-P1a2  Mdo-Mir-15-P1a  Mml-Mir-15-P1a  Mmr-Mir-15-P1a  Mmu-Mir-15-P1a  Mun-Mir-15-P1a  Neu-Mir-15-P1a  Oan-Mir-15-P1a  Ocu-Mir-15-P1a  Pab-Mir-15-P1a  Rno-Mir-15-P1a  Sha-Mir-15-P1a  Spt-Mir-15-P1a  Sto-Mir-15-P1a  Tgu-Mir-15-P1a  Xtr-Mir-15-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Olfactores
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 2: 11019294-11019352 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1a2)		 Mir-15-P1a2 2: 11019294-11019352 [+] UCSC Ensembl
Mir-15-P2a2 2: 11019481-11019546 [+] UCSC Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
CCUCCGUCACGAGCAGUUCUGGUGAUGCUGUAGCAGCACGGAAUGGUUUGUGAGUUACACUGAGAUACAAGCCAUGCUGUGCUGCCGCAGGACAGCCCGAGAGUGCAGCCUGACCGCCU
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Structure
        10          20        30        40        50         
CCUCCGUCACGAGCAGU--| U   GAUG   UA         A          AGUUAC 
                   UC GGU    CUG  GCAGCACGG AUGGUUUGUG      \
                   AG CCG    GAC  CGUCGUGUC UACCGAACAU      A
UCCGCCAGUCCGACGUGAG^ C   ACAG   GC         G          AGAGUC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Sp Sp Sp To
Mature sequence

Tni-Mir-15-P1a2_5p
mirBase accessionMIMAT0003106
Sequence 
0- UAGCAGCACGGAAUGGUUUGUG -22
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Star sequence

Tni-Mir-15-P1a2_3p*
mirBase accessionNone
Sequence 
37- CAAGCCAUGCUGUGCUGCCGCA -59
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