MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-15-P1b

Family name MIR-15 (all species)
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-15-P1a  Lch-Mir-15-P1c  Lch-Mir-15-P2a  Lch-Mir-15-P2b  Lch-Mir-15-P2c 
Orthologues Aca-Mir-15-P1b  Ami-Mir-15-P1b  Bta-Mir-15-P1b  Cfa-Mir-15-P1b  Cin-Mir-15-P1  Cja-Mir-15-P1b  Cli-Mir-15-P1b  Cmi-Mir-15-P1b  Cpi-Mir-15-P1b  Cpo-Mir-15-P1b  Dno-Mir-15-P1b  Dre-Mir-15-P1b  Eca-Mir-15-P1b  Ete-Mir-15-P1b  Gga-Mir-15-P1b  Gja-Mir-15-P1b  Gmo-Mir-15-P1b  Hsa-Mir-15-P1b  Laf-Mir-15-P1b  Loc-Mir-15-P1b  Mal-Mir-15-P1b  Mml-Mir-15-P1b  Mmr-Mir-15-P1b  Mmu-Mir-15-P1b  Mun-Mir-15-P1b  Oan-Mir-15-P1b  Ocu-Mir-15-P1b  Pab-Mir-15-P1b  Pbv-Mir-15-P1b  Rno-Mir-15-P1b  Sha-Mir-15-P1b  Spt-Mir-15-P1b  Sto-Mir-15-P1b  Tgu-Mir-15-P1b  Tni-Mir-15-P1b  Xla-Mir-15-P1b1  Xla-Mir-15-P1b2  Xtr-Mir-15-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(LatCha1_add)		 JH127319.1: 508178-508236 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1b)		 Mir-15-P2b JH127319.1: 508022-508085 [-] Ensembl
Mir-15-P1b JH127319.1: 508178-508236 [-] Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
UGUUGUACUUCUGGUGGCCUUAAAGUGCUGUAGCAGCACAUCAUGGUUUGCAACACUAGUUAAGAUGCAAAUCAUUAUUUGCUGCUUUAGAAUUUUAGGGGAAAAGAUUCUUGGACAGU
Get precursor sequence
Structure
        10          20        30        40        50         
UGUUGUACUUCUGGUGG--|        G   U       C  C          ACACUA 
                   CCUUAAAGU CUG AGCAGCA AU AUGGUUUGCA      \
                   GGGAUUUUA GAU UCGUCGU UA UACUAAACGU      G
UGACAGGUUCUUAGAAAAG^        A   U       U  U          AGAAUU 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Mature sequence

Lch-Mir-15-P1b_5p (predicted)
mirBase accessionNone
Sequence 
0- UAGCAGCACAUCAUGGUUUGCA -22
Get sequence
Star sequence

Lch-Mir-15-P1b_3p* (predicted)
mirBase accessionNone
Sequence 
37- CAAAUCAUUAUUUGCUGCUUUA -59
Get sequence