MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-15-P1b

Family name MIR-15 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-15-P1a  Cja-Mir-15-P1c  Cja-Mir-15-P1d  Cja-Mir-15-P2a  Cja-Mir-15-P2b  Cja-Mir-15-P2c  Cja-Mir-15-P2d 
Orthologues Aca-Mir-15-P1b  Ami-Mir-15-P1b  Bta-Mir-15-P1b  Cfa-Mir-15-P1b  Cin-Mir-15-P1  Cli-Mir-15-P1b  Cmi-Mir-15-P1b  Cpi-Mir-15-P1b  Cpo-Mir-15-P1b  Dno-Mir-15-P1b  Dre-Mir-15-P1b  Eca-Mir-15-P1b  Ete-Mir-15-P1b  Gga-Mir-15-P1b  Gja-Mir-15-P1b  Gmo-Mir-15-P1b  Hsa-Mir-15-P1b  Laf-Mir-15-P1b  Lch-Mir-15-P1b  Loc-Mir-15-P1b  Mal-Mir-15-P1b  Mml-Mir-15-P1b  Mmr-Mir-15-P1b  Mmu-Mir-15-P1b  Mun-Mir-15-P1b  Oan-Mir-15-P1b  Ocu-Mir-15-P1b  Pab-Mir-15-P1b  Pbv-Mir-15-P1b  Rno-Mir-15-P1b  Sha-Mir-15-P1b  Spt-Mir-15-P1b  Sto-Mir-15-P1b  Tgu-Mir-15-P1b  Tni-Mir-15-P1b  Xla-Mir-15-P1b1  Xla-Mir-15-P1b2  Xtr-Mir-15-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021931.1: 17950834-17950893 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1b)		 Mir-15-P2b CM021931.1: 17950682-17950746 [-] UCSC Ensembl
Mir-15-P1b CM021931.1: 17950834-17950893 [-] UCSC Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
AUCCUGUGUUUUUGAGGCCUUAAAGUACUGUAGCAGCACAUCAUGGUUUACAUACUACAGUCAAGAUGCGAAUCAUUAUUUGCUGCUCUAGAAAUUUAAGGAAAUUCAUUCAAAACUAUG
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Structure
        10          20        30        40        50         
AUCCUGUGUUUUUGAGG--|      GUA   U       C  C      UA  UACUAC 
                   CCUUAAA   CUG AGCAGCA AU AUGGUU  CA      A
                   GGAAUUU   GAU UCGUCGU UA UACUAA  GU      G
GUAUCAAAACUUACUUAAA^      AAA   C       U  U      GC  AGAACU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
- +
To
Mature sequence

Cja-Mir-15-P1b_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACAUCAUGGUUUACA -22
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Star sequence

Cja-Mir-15-P1b_3p*
mirBase accessionNone
Sequence 
38- CGAAUCAUUAUUUGCUGCUCUA -60
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