MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-15-P2d

Family name MIR-15 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-15-P1a  Cja-Mir-15-P1b  Cja-Mir-15-P1c  Cja-Mir-15-P1d  Cja-Mir-15-P2a  Cja-Mir-15-P2b  Cja-Mir-15-P2c 
Orthologues Aca-Mir-15-P2d  Ami-Mir-15-P2d  Bta-Mir-15-P2d  Cfa-Mir-15-P2d  Cin-Mir-15-P2  Cpo-Mir-15-P2d  Dno-Mir-15-P2d  Dre-Mir-15-P2d  Eca-Mir-15-P2d  Ete-Mir-15-P2d  Gja-Mir-15-P2d  Hsa-Mir-15-P2d  Laf-Mir-15-P2d  Loc-Mir-15-P2d  Mal-Mir-15-P2d  Mdo-Mir-15-P2d  Mml-Mir-15-P2d  Mmr-Mir-15-P2d  Mmu-Mir-15-P2d  Neu-Mir-15-P2d  Oan-Mir-15-P2d  Ocu-Mir-15-P2d  Pab-Mir-15-P2d  Rno-Mir-15-P2d  Sha-Mir-15-P2d  Sto-Mir-15-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021919.1: 69655520-69655580 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2d)		 Mir-15-P2d CM021919.1: 69655520-69655580 [-] UCSC Ensembl
Mir-15-P1d CM021919.1: 69655841-69655902 [-] UCSC Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
UUUGUUGCCCACACCCAGCUUCCCUGGCUCUAGCAGCACAGAAAUAUUGGCACAAGGAAGCAAGUCUGCCAAUAUUGGCUGUGCUGCUGCAGGCAGGGUGGCAAGAGCAACUGAGGAGGGG
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Structure
        10          20        30        40         50         
UUUGUUGCCCACACCCA--   U     G  C           A-|         CAAGGA 
                   GCU CCCUG CU UAGCAGCACAG  AAUAUUGGCA      A
                   CGG GGGAC GA GUCGUCGUGUC  UUAUAACCGU      G
GGGGAGGAGUCAACGAGAA   U     G  C           GG^         CUGAAC 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Cja-Mir-15-P2d_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACAGAAAUAUUGGCA -22
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Star sequence

Cja-Mir-15-P2d_3p*
mirBase accessionNone
Sequence 
38- CCAAUAUUGGCUGUGCUGCUGCA -61
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