MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-15-P2d

Family name MIR-15 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-15-P1a  Sha-Mir-15-P1b  Sha-Mir-15-P1c  Sha-Mir-15-P1d  Sha-Mir-15-P2a  Sha-Mir-15-P2b  Sha-Mir-15-P2c-v1 
Orthologues Aca-Mir-15-P2d  Ami-Mir-15-P2d  Bta-Mir-15-P2d  Cfa-Mir-15-P2d  Cin-Mir-15-P2  Cja-Mir-15-P2d  Cpo-Mir-15-P2d  Dno-Mir-15-P2d  Dre-Mir-15-P2d  Eca-Mir-15-P2d  Ete-Mir-15-P2d  Gja-Mir-15-P2d  Hsa-Mir-15-P2d  Laf-Mir-15-P2d  Loc-Mir-15-P2d  Mal-Mir-15-P2d  Mdo-Mir-15-P2d  Mml-Mir-15-P2d  Mmr-Mir-15-P2d  Mmu-Mir-15-P2d  Neu-Mir-15-P2d  Oan-Mir-15-P2d  Ocu-Mir-15-P2d  Pab-Mir-15-P2d  Rno-Mir-15-P2d  Sto-Mir-15-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(DEVIL_add)		 GL858641.1: 5479-5540 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2d)		 Mir-15-P1d GL858641.1: 5142-5203 [+] UCSC Ensembl
Mir-15-P2d GL858641.1: 5479-5540 [+] UCSC Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
CUCCCACCACCACUUUGGCCUCCCUGGCUUUAGCAGCACAGAAAUAUUGGCACCUGAAGGAAAGUCAUGCCAGUAUUGAAAGUGCUGCUCCAGACAGGAUGGCUACAGCAGCUAUGGGGAGA
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Structure
        10          20        30        40         50          
CUCCCACCACCACUUUG--   UC    G  UU        AGA-|         CCUGAAG 
                   GCC  CCUG CU  AGCAGCAC    AAUAUUGGCA       \
                   CGG  GGAC GA  UCGUCGUG    UUAUGACCGU       G
AGAGGGGUAUCGACGACAU   UA    A  CC        AAAG^         ACUGAAA 
120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-15-P2d_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACAGAAAUAUUGGCA -22
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Star sequence

Sha-Mir-15-P2d_3p* (predicted)
mirBase accessionNone
Sequence 
39- CCAGUAUUGAAAGUGCUGCUCCA -62
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