Mir-15-P2b

MirGeneDB ID

Sha-Mir-15-P2b

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-15-P1a Sha-Mir-15-P1b Sha-Mir-15-P1c Sha-Mir-15-P1d Sha-Mir-15-P2a Sha-Mir-15-P2c-v1 Sha-Mir-15-P2c-v2 Sha-Mir-15-P2d

Orthologues

Aca-Mir-15-P2b Ami-Mir-15-P2b Bta-Mir-15-P2b Cfa-Mir-15-P2b Cin-Mir-15-P2 Cli-Mir-15-P2b Cmi-Mir-15-P2b Cpi-Mir-15-P2b Cpo-Mir-15-P2b Dno-Mir-15-P2b Dre-Mir-15-P2b Ete-Mir-15-P2b Gga-Mir-15-P2b Gja-Mir-15-P2b Gmo-Mir-15-P2b Hsa-Mir-15-P2b Lch-Mir-15-P2b Loc-Mir-15-P2b Mal-Mir-15-P2b Mdo-Mir-15-P2b Mml-Mir-15-P2b Mmu-Mir-15-P2b Mun-Mir-15-P2b Oan-Mir-15-P2b Ocu-Mir-15-P2b Pbv-Mir-15-P2b Rno-Mir-15-P2b Spt-Mir-15-P2b Sto-Mir-15-P2b Tgu-Mir-15-P2b Tni-Mir-15-P2b Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xtr-Mir-15-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(DEVIL_add)

GL849915.1: 2594590-2594654 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAACUUACCAUGGAGCUGCUUGUUCCGCUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAGUAAAUCUUAAACCCCAAUAUUAUUGUGCUGCUUUAGUGUGGCAGGCCUACAACAGCAAGUGCCCU

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Structure

        10          20        30        40        50        60  
UAACUUACCAUGGAGCU--|     UC    CU         UA        C  AGUGAAGU 
                   GCUUGU  CGCU  AGCAGCACG  AAUAUUGG GU        \
                   CGGACG  GUGA  UCGUCGUGU  UUAUAACC CA        A
UCCCGUGAACGACAACAUC^     GU    UU         UA        C  AAUUCUAA 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-15-P2b_5p

mirBase accession

None

Sequence

0- UAGCAGCACGUAAAUAUUGGCGU -23

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Star sequence

Sha-Mir-15-P2b_3p*

mirBase accession

None

Sequence

42- CCCAAUAUUAUUGUGCUGCUUUA -65

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