MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-15-P2b

Family name MIR-15 (all species)
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-15-P1a  Laf-Mir-15-P1b  Laf-Mir-15-P1c  Laf-Mir-15-P1d  Laf-Mir-15-P2a  Laf-Mir-15-P2c  Laf-Mir-15-P2d 
Orthologues Aca-Mir-15-P2b  Ami-Mir-15-P2b  Bta-Mir-15-P2b  Cfa-Mir-15-P2b  Cin-Mir-15-P2  Cja-Mir-15-P2b  Cli-Mir-15-P2b  Cmi-Mir-15-P2b  Cpi-Mir-15-P2b  Cpo-Mir-15-P2b  Dno-Mir-15-P2b  Dre-Mir-15-P2b  Eca-Mir-15-P2b  Ete-Mir-15-P2b  Gga-Mir-15-P2b  Gja-Mir-15-P2b  Gmo-Mir-15-P2b  Hsa-Mir-15-P2b  Lch-Mir-15-P2b  Loc-Mir-15-P2b  Mal-Mir-15-P2b  Mdo-Mir-15-P2b  Mml-Mir-15-P2b  Mmr-Mir-15-P2b  Mmu-Mir-15-P2b  Mun-Mir-15-P2b  Neu-Mir-15-P2b  Oan-Mir-15-P2b  Ocu-Mir-15-P2b  Pab-Mir-15-P2b  Pbv-Mir-15-P2b  Rno-Mir-15-P2b  Sha-Mir-15-P2b  Spt-Mir-15-P2b  Sto-Mir-15-P2b  Tgu-Mir-15-P2b  Tni-Mir-15-P2b  Xla-Mir-15-P2b1  Xla-Mir-15-P2b2  Xtr-Mir-15-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010068.1: 315167-315231 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2b)		 Mir-15-P2b GL010068.1: 315167-315231 [-] UCSC Ensembl
Mir-15-P1b GL010068.1: 315319-315378 [-] UCSC Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
UUUGGAUGGACUGACAUGCUUGUUCCACUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAGUAAAUAUUAGACCCCAAUAUUAUUGUGCUGCUUUAGUGUGACAGGGAUACAGCAUCUAUUUACCA
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Structure
        10          20        30        40        50        60  
UUUGGAUGGACUGACAUG--|    UC    CU         UA        C  AGUGAAGU 
                    CUUGU  CACU  AGCAGCACG  AAUAUUGG GU        \
                    GGACA  GUGA  UCGUCGUGU  UUAUAACC CA        A
ACCAUUUAUCUACGACAUAG^    GU    UU         UA        C  GAUUAUAA 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Wh
Mature sequence

Laf-Mir-15-P2b_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACGUAAAUAUUGGCGU -23
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Star sequence

Laf-Mir-15-P2b_3p*
mirBase accessionNone
Sequence 
42- CCCAAUAUUAUUGUGCUGCUUUA -65
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