MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-15-P2b

Family name MIR-15 (all species)
Seed AGCAGCA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-16
Paralogues Rno-Mir-15-P1a  Rno-Mir-15-P1b  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Rno-Mir-15-P1d  Rno-Mir-15-P2a  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4  Rno-Mir-15-P2d 
Orthologues Aca-Mir-15-P2b  Ami-Mir-15-P2b  Bta-Mir-15-P2b  Cfa-Mir-15-P2b  Cin-Mir-15-P2  Cli-Mir-15-P2b  Cmi-Mir-15-P2b  Cpi-Mir-15-P2b  Cpo-Mir-15-P2b  Dno-Mir-15-P2b  Dre-Mir-15-P2b  Ete-Mir-15-P2b  Gga-Mir-15-P2b  Gja-Mir-15-P2b  Gmo-Mir-15-P2b  Hsa-Mir-15-P2b  Lch-Mir-15-P2b  Loc-Mir-15-P2b  Mal-Mir-15-P2b  Mdo-Mir-15-P2b  Mml-Mir-15-P2b  Mmu-Mir-15-P2b  Mun-Mir-15-P2b  Oan-Mir-15-P2b  Ocu-Mir-15-P2b  Pbv-Mir-15-P2b  Sha-Mir-15-P2b  Spt-Mir-15-P2b  Sto-Mir-15-P2b  Tgu-Mir-15-P2b  Tni-Mir-15-P2b  Xla-Mir-15-P2b1  Xla-Mir-15-P2b2  Xtr-Mir-15-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(rn6)
chr2: 165606088-165606152 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2b)
Mir-15-P1b chr2: 165605942-165606001 [+] UCSC Ensembl
Mir-15-P2b chr2: 165606088-165606152 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUUUGGACAUUGACAUACUUGUUCCGCUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAUAUUAAACACCAAUAUUAUUGUGCUGCUUUAGUGUGACAGGGAUAUAGCAACUCCCUUUAA
Get precursor sequence
Structure
        10          20        30        40        50        60  
UGUUUGGACAUUGACAUA--|    UC    CU         UA        C  AGUGAAAU 
                    CUUGU  CGCU  AGCAGCACG  AAUAUUGG GU        \
                    GGACA  GUGA  UCGUCGUGU  UUAUAACC CA        A
AAUUUCCCUCAACGAUAUAG^    GU    UU         UA        A  AAUUAUAA 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-15-P2b_5p

mirBase accessionMIMAT0000785
Sequence
0- UAGCAGCACGUAAAUAUUGGCGU -23
Get sequence
Proposed targets microrna.org: MIMAT0000785
TargetScanVert: rno-miR-16-5p
miRDB: MIMAT0000785
Star sequence

Rno-Mir-15-P2b_3p*

mirBase accessionMIMAT0017094
Sequence
42- ACCAAUAUUAUUGUGCUGCUUUA -65
Get sequence
Proposed targets TargetScanVert: rno-miR-16-3p
miRDB: MIMAT0017094