Mir-15-P2a

MirGeneDB ID

Rno-Mir-15-P2a

Family name

Species

MiRBase ID

Paralogues

Rno-Mir-15-P1a Rno-Mir-15-P1b Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Rno-Mir-15-P1d Rno-Mir-15-P2b Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Rno-Mir-15-P2d

Orthologues

Ami-Mir-15-P2a Bta-Mir-15-P2a Cfa-Mir-15-P2a Cin-Mir-15-P2 Cja-Mir-15-P2a Cli-Mir-15-P2a Cmi-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Eca-Mir-15-P2a Ete-Mir-15-P2a Gga-Mir-15-P2a Gja-Mir-15-P2a Gmo-Mir-15-P2a2 Hsa-Mir-15-P2a Laf-Mir-15-P2a Lch-Mir-15-P2a Loc-Mir-15-P2a Mal-Mir-15-P2a2 Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmr-Mir-15-P2a Mmu-Mir-15-P2a Mun-Mir-15-P2a Neu-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Pab-Mir-15-P2a Pbv-Mir-15-P2a Sha-Mir-15-P2a Spt-Mir-15-P2a Sto-Mir-15-P2a Tgu-Mir-15-P2a Tni-Mir-15-P2a2 Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xtr-Mir-15-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(rn6)

901866519: 341-405 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2a)

Mir-15-P1a 901866519: 202-260 [+] UCSC Ensembl
Mir-15-P2a 901866519: 341-405 [+] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

GCUCCUAUGAUAGCGAUGUCAGCAGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUGAGAUUAUCUCCAGUAUUGACUGUGCUGCUGAAGUAAGGUUGACAAUACUCUACAACCGUAGU

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Structure

        10          20        30         40        50        60 
GCUCCUAUGAUAGCGAU--      AG   C          -| A        CGUUAAGAUU 
                   GUCAGC  UGC UUAGCAGCAC GU AAUAUUGG          C
                   CAGUUG  AUG AGUCGUCGUG CA UUAUGACC          U
UGAUGCCAACAUCUCAUAA      GA   A          U^ G        UCUAUUAGAG 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

Comment

Not in assembly but in trace archive.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-15-P2a_5p

mirBase accession

None

Sequence

0- UAGCAGCACGUAAAUAUUGGCG -22

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Star sequence

Rno-Mir-15-P2a_3p*

mirBase accession

None

Sequence

42- CCAGUAUUGACUGUGCUGCUGAA -65

Get sequence