Mir-15-P2a

MirGeneDB ID

Gga-Mir-15-P2a

Family name

MIR-15 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-16-1

Paralogues

Gga-Mir-15-P1a Gga-Mir-15-P1b Gga-Mir-15-P1c Gga-Mir-15-P2b Gga-Mir-15-P2c

Orthologues

Ami-Mir-15-P2a Bta-Mir-15-P2a Cfa-Mir-15-P2a Cin-Mir-15-P2 Cja-Mir-15-P2a Cli-Mir-15-P2a Cmi-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Eca-Mir-15-P2a Ete-Mir-15-P2a Gja-Mir-15-P2a Gmo-Mir-15-P2a2 Hsa-Mir-15-P2a Laf-Mir-15-P2a Lch-Mir-15-P2a Loc-Mir-15-P2a Mal-Mir-15-P2a2 Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmr-Mir-15-P2a Mmu-Mir-15-P2a Mun-Mir-15-P2a Neu-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Pab-Mir-15-P2a Pbv-Mir-15-P2a Rno-Mir-15-P2a Sha-Mir-15-P2a Spt-Mir-15-P2a Sto-Mir-15-P2a Tgu-Mir-15-P2a Tni-Mir-15-P2a2 Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xtr-Mir-15-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(Gallus_gallus.GRCg6a)

1: 170717622-170717684 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2a)

Mir-15-P2a 1: 170717622-170717684 [-] UCSC Ensembl
Mir-15-P1a 1: 170717767-170717825 [-] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

AAUCUUGUGAUGCUGAUGUCUGUCAUACUCUAGCAGCACGUAAAUAUUGGUGUUAAAACUGUAAAUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGCUAGCCACUUCUGCAUGUGAGUCA

Get precursor sequence

Structure

        10          20        30         40        50        60
AAUCUUGUGAUGCUGAU--  CU   A    C         -| A        UGUUAAAAC 
                   GU  GUC UACU UAGCAGCAC GU AAUAUUGG         U
                   CG  CGG AUGA GUCGUCGUG CA UUAUGACC         G
ACUGAGUGUACGUCUUCAC  AU   A    A         U^ A        UCUAUAAAU 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-15-P2a_5p

mirBase accession

MIMAT0001116

Sequence

0- UAGCAGCACGUAAAUAUUGGUG -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-16-5p
miRDB: MIMAT0001116

Star sequence

Gga-Mir-15-P2a_3p*

mirBase accession

MIMAT0026500

Sequence

40- CCAGUAUUAACUGUGCUGCUGAA -63

Get sequence

Proposed targets

TargetScanVert: gga-miR-16-1-3p
miRDB: MIMAT0026500