| MirGeneDB ID | Spt-Mir-15-P2a |
|---|---|
| Family name | MIR-15 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-15-P1a Spt-Mir-15-P1b Spt-Mir-15-P1c Spt-Mir-15-P2b Spt-Mir-15-P2c |
| Orthologues | Ami-Mir-15-P2a Bta-Mir-15-P2a Cfa-Mir-15-P2a Cin-Mir-15-P2 Cja-Mir-15-P2a Cli-Mir-15-P2a Cmi-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Eca-Mir-15-P2a Ete-Mir-15-P2a Gga-Mir-15-P2a Gja-Mir-15-P2a Gmo-Mir-15-P2a2 Hsa-Mir-15-P2a Laf-Mir-15-P2a Lch-Mir-15-P2a Loc-Mir-15-P2a Mal-Mir-15-P2a2 Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmr-Mir-15-P2a Mmu-Mir-15-P2a Mun-Mir-15-P2a Neu-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Pab-Mir-15-P2a Pbv-Mir-15-P2a Rno-Mir-15-P2a Sha-Mir-15-P2a Sto-Mir-15-P2a Tgu-Mir-15-P2a Tni-Mir-15-P2a2 Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xtr-Mir-15-P2a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Olfactores |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01014606.1: 2611741-2611803 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-15-P2a) |
Mir-15-P1a
QEPC01014606.1: 2611600-2611658 [+]
UCSC
Ensembl
Mir-15-P2a QEPC01014606.1: 2611741-2611803 [+] UCSC Ensembl |
| Seed | AGCAGCA |
| Precursor (pre-Mir +30nt flank) |
AUACUCCUGAUUCCAAUGUCAGCAGUGCCUUAGCAGCACGUAAAUAUUGGUGUUAUGACUGUUAAUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGCUGACUUCUCUCUGCAAGUGAAACGet precursor sequence |
| Structure | 10 20 30 40 50 60 AUACUCCUGAUUCCAAU-- AG C -| A UGUUAUGAC GUCAGC UGC UUAGCAGCAC GU AAUAUUGG U CAGUCG AUG AGUCGUCGUG CA UUAUGACC G CAAAGUGAACGUCUCUCUU GA A U^ A UCUAUAAUU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Spt-Mir-15-P2a_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAGCAGCACGUAAAUAUUGGUG -22
Get sequence
|
| Star sequence | Spt-Mir-15-P2a_3p* (predicted) |
| mirBase accession | None |
| Sequence |
40- CCAGUAUUAACUGUGCUGCUGAA -63
Get sequence
|
