Mir-15-P2a2

MirGeneDB ID

Gmo-Mir-15-P2a2

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-16b

Paralogues

Gmo-Mir-15-P1a2 Gmo-Mir-15-P1b Gmo-Mir-15-P2b

Orthologues

Ami-Mir-15-P2a Bta-Mir-15-P2a Cfa-Mir-15-P2a Cin-Mir-15-P2 Cli-Mir-15-P2a Cmi-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Dre-Mir-15-P2a2 Ete-Mir-15-P2a Gga-Mir-15-P2a Gja-Mir-15-P2a Hsa-Mir-15-P2a Lch-Mir-15-P2a Loc-Mir-15-P2a Mal-Mir-15-P2a2 Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmu-Mir-15-P2a Mun-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Pbv-Mir-15-P2a Rno-Mir-15-P2a Sha-Mir-15-P2a Spt-Mir-15-P2a Sto-Mir-15-P2a Tgu-Mir-15-P2a Tni-Mir-15-P2a2 Xtr-Mir-15-P2a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Olfactores

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_413: 520865-520930 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2a2)

Mir-15-P1a2 GeneScaffold_413: 520593-520650 [+] UCSC Ensembl
Mir-15-P2a2 GeneScaffold_413: 520865-520930 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUAUGGGUGACGCUAUUGGUGGCCUUGCUGUAGCAGCACGUAAAUAUUGGAGUUUACACUGUCGCAUAUGCCUCCAGUAUUGAUCGUGCUGCUGAAGCAAAACUGACCACUUACCAACCUUAAAAC

Get precursor sequence

Structure

        10         20         30        40         50        60  
AUAUGGGUGACGCUAUU-   -  CC     G          UA-|         UUUACACUG 
                  GGU GG  UUGCU UAGCAGCACG   AAUAUUGGAG         \
                  CCA UC  AACGA GUCGUCGUGC   UUAUGACCUC         U
CAAAAUUCCAACCAUUCA   G  AA     A          UAG^         CGUAUACGC 
    120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-15-P2a2_5p

mirBase accession

MIMAT0044268

Sequence

0- UAGCAGCACGUAAAUAUUGGAG -22

Get sequence

Star sequence

Gmo-Mir-15-P2a2_3p*

mirBase accession

None

Sequence

43- CCAGUAUUGAUCGUGCUGCUGAA -66

Get sequence