MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-15-P2a

Family name MIR-15 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-15-P1a  Loc-Mir-15-P1b  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Loc-Mir-15-P1d  Loc-Mir-15-P2b  Loc-Mir-15-P2c  Loc-Mir-15-P2d 
Orthologues Ami-Mir-15-P2a  Bta-Mir-15-P2a  Cfa-Mir-15-P2a  Cin-Mir-15-P2  Cja-Mir-15-P2a  Cli-Mir-15-P2a  Cmi-Mir-15-P2a  Cpi-Mir-15-P2a  Cpo-Mir-15-P2a  Dno-Mir-15-P2a  Dre-Mir-15-P2a1  Dre-Mir-15-P2a2  Eca-Mir-15-P2a  Ete-Mir-15-P2a  Gga-Mir-15-P2a  Gja-Mir-15-P2a  Gmo-Mir-15-P2a2  Hsa-Mir-15-P2a  Laf-Mir-15-P2a  Lch-Mir-15-P2a  Mal-Mir-15-P2a2  Mdo-Mir-15-P2a  Mml-Mir-15-P2a  Mmr-Mir-15-P2a  Mmu-Mir-15-P2a  Mun-Mir-15-P2a  Neu-Mir-15-P2a  Oan-Mir-15-P2a  Ocu-Mir-15-P2a  Pab-Mir-15-P2a  Pbv-Mir-15-P2a  Rno-Mir-15-P2a  Sha-Mir-15-P2a  Spt-Mir-15-P2a  Sto-Mir-15-P2a  Tgu-Mir-15-P2a  Tni-Mir-15-P2a2  Xla-Mir-15-P2a3  Xla-Mir-15-P2a4  Xtr-Mir-15-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(LepOcu1)		 LG17: 24936650-24936714 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2a)		 Mir-15-P2a LG17: 24936650-24936714 [-] Ensembl
Mir-15-P1a LG17: 24936841-24936899 [-] Ensembl
Seed AGCAGCA
Precursor
(pre-Mir +30nt flank)		 
AGCAUAACGUUUAUAAUGGCAGCCAUGCUUUAGCAGCACGUAAAUAUUGGAGUUAAACCACUUCAUAUCUCUCCAGUAUUGAUCGUGCUGCUGAAGUAAGAUUGUUCAUUUGUCAUCACGAAGAA
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Structure
        10          20        30        40         50        60 
AGCAUAACGUUUAUAAU--     CCA               UA-|         UUAAACCA 
                   GGCAG   UGCUUUAGCAGCACG   AAUAUUGGAG        C
                   UUGUU   AUGAAGUCGUCGUGC   UUAUGACCUC        U
AAGAAGCACUACUGUUUAC     AGA               UAG^         UCUAUACU 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-15-P2a_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACGUAAAUAUUGGAG -22
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Star sequence

Loc-Mir-15-P2a_3p*
mirBase accessionNone
Sequence 
42- CCAGUAUUGAUCGUGCUGCUGAA -65
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