Mir-15-P2a

MirGeneDB ID

Cfa-Mir-15-P2a

Family name

MIR-15 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-16-1

Paralogues

Cfa-Mir-15-P1a Cfa-Mir-15-P1b Cfa-Mir-15-P1c Cfa-Mir-15-P1d Cfa-Mir-15-P2b Cfa-Mir-15-P2c Cfa-Mir-15-P2d

Orthologues

Ami-Mir-15-P2a Bta-Mir-15-P2a Cin-Mir-15-P2 Cja-Mir-15-P2a Cli-Mir-15-P2a Cmi-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Eca-Mir-15-P2a Ete-Mir-15-P2a Gga-Mir-15-P2a Gja-Mir-15-P2a Gmo-Mir-15-P2a2 Hsa-Mir-15-P2a Laf-Mir-15-P2a Lch-Mir-15-P2a Loc-Mir-15-P2a Mal-Mir-15-P2a2 Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmr-Mir-15-P2a Mmu-Mir-15-P2a Mun-Mir-15-P2a Neu-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Pab-Mir-15-P2a Pbv-Mir-15-P2a Rno-Mir-15-P2a Sha-Mir-15-P2a Spt-Mir-15-P2a Sto-Mir-15-P2a Tgu-Mir-15-P2a Tni-Mir-15-P2a2 Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xtr-Mir-15-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(canFam3_add)

chr22: 1847020-1847084 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2a)

Mir-15-P1a chr22: 1846880-1846938 [+] UCSC Ensembl
Mir-15-P2a chr22: 1847020-1847084 [+] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

GCUCUUAUGAUAGUGAUGUCAGCAGUGCCUUAGCAGCACGUAAAUAUUGGCGUUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGUUGGCCAUACUCUACAGUUUGAUA

Get precursor sequence

Structure

        10          20        30         40        50        60 
GCUCUUAUGAUAGUGAU--      AG   C          -| A        CGUUAAGAUU 
                   GUCAGC  UGC UUAGCAGCAC GU AAUAUUGG          C
                   CGGUUG  AUG AGUCGUCGUG CA UUAUGACC          U
AUAGUUUGACAUCUCAUAC      GA   A          U^ A        UCUAUUAAAA 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-15-P2a_5p

mirBase accession

MIMAT0006648

Sequence

0- UAGCAGCACGUAAAUAUUGGCG -22

Get sequence

Proposed targets

TargetScanVert: cfa-miR-16
miRDB: MIMAT0006648

Star sequence

Cfa-Mir-15-P2a_3p*

mirBase accession

None

Sequence

42- CCAGUAUUAACUGUGCUGCUGAA -65

Get sequence