MirGeneDB 2.1

MirGeneDB ID

Gja-Mir-15-P2a

Family name MIR-15 (all species)
Seed AGCAGCA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-15-P1a  Gja-Mir-15-P1b  Gja-Mir-15-P1c  Gja-Mir-15-P2b  Gja-Mir-15-P2c  Gja-Mir-15-P2d 
Orthologues Ami-Mir-15-P2a  Bta-Mir-15-P2a  Cfa-Mir-15-P2a  Cin-Mir-15-P2  Cli-Mir-15-P2a  Cmi-Mir-15-P2a  Cpi-Mir-15-P2a  Cpo-Mir-15-P2a  Dno-Mir-15-P2a  Dre-Mir-15-P2a1  Dre-Mir-15-P2a2  Ete-Mir-15-P2a  Gga-Mir-15-P2a  Gmo-Mir-15-P2a2  Hsa-Mir-15-P2a  Lch-Mir-15-P2a  Loc-Mir-15-P2a  Mal-Mir-15-P2a2  Mdo-Mir-15-P2a  Mml-Mir-15-P2a  Mmu-Mir-15-P2a  Mun-Mir-15-P2a  Oan-Mir-15-P2a  Ocu-Mir-15-P2a  Pbv-Mir-15-P2a  Rno-Mir-15-P2a  Sha-Mir-15-P2a  Spt-Mir-15-P2a  Sto-Mir-15-P2a  Tgu-Mir-15-P2a  Tni-Mir-15-P2a2  Xla-Mir-15-P2a3  Xla-Mir-15-P2a4  Xtr-Mir-15-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCF_001447785.1_Gekko_japonicus)
NW_015176538.1: 29243-29308 [-]
Precursor
(pre-Mir +30nt flank)
UGGCAUAGGUUCCUGGUGUCAGCUGUGCCCUAGCAGCACAAAAAUAUUGGGAGUUAUUCUUAGUCAAGUGCCUCCAAUAUUGACUGUGCUGCUGAAGUAAGGCUGAUUAUUCUUCCACAAGUCUCU
Get precursor sequence
Structure
        10          20        30        40         50        60  
UGGCAUAGGUUCCUGGU--       G   CC          AA-|        AGUUAUUCUU 
                   GUCAGCU UGC  UAGCAGCACA   AAUAUUGGG          \
                   UAGUCGG AUG  GUCGUCGUGU   UUAUAACCU          A
UCUCUGAACACCUUCUUAU       A   AA          CAG^        CCGUGAACUG 
    120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere is a 1 nt insertion in the Gekko japonica genome sequence relative to the Coleonyx read data.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Gja-Mir-15-P2a_5p (predicted)

mirBase accessionNone
Sequence
0- UAGCAGCACAAAAAUAUUGGGAG -23
Get sequence
Star sequence

Gja-Mir-15-P2a_3p*

mirBase accessionNone
Sequence
42- UCCAAUAUUGACUGUGCUGCUGAA -66
Get sequence