MirGeneDB 2.1
MirGeneDB ID

Cpi-Mir-15-P2a

Family name MIR-15 (all species)
Seed AGCAGCA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-16a
Paralogues Cpi-Mir-15-P1a  Cpi-Mir-15-P1b  Cpi-Mir-15-P1c  Cpi-Mir-15-P2b  Cpi-Mir-15-P2c 
Orthologues Ami-Mir-15-P2a  Bta-Mir-15-P2a  Cfa-Mir-15-P2a  Cin-Mir-15-P2  Cli-Mir-15-P2a  Cmi-Mir-15-P2a  Cpo-Mir-15-P2a  Dno-Mir-15-P2a  Dre-Mir-15-P2a1  Dre-Mir-15-P2a2  Ete-Mir-15-P2a  Gga-Mir-15-P2a  Gja-Mir-15-P2a  Gmo-Mir-15-P2a2  Hsa-Mir-15-P2a  Lch-Mir-15-P2a  Loc-Mir-15-P2a  Mal-Mir-15-P2a2  Mdo-Mir-15-P2a  Mml-Mir-15-P2a  Mmu-Mir-15-P2a  Mun-Mir-15-P2a  Oan-Mir-15-P2a  Ocu-Mir-15-P2a  Pbv-Mir-15-P2a  Rno-Mir-15-P2a  Sha-Mir-15-P2a  Spt-Mir-15-P2a  Sto-Mir-15-P2a  Tgu-Mir-15-P2a  Tni-Mir-15-P2a2  Xla-Mir-15-P2a3  Xla-Mir-15-P2a4  Xtr-Mir-15-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(chrPic1)		 JH584518: 1366620-1366682 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2a)		 Mir-15-P1a JH584518: 1366486-1366544 [+] UCSC Ensembl
Mir-15-P2a JH584518: 1366620-1366682 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUAACAUGAUCCUGAUGUCAGCAGUACAUUAGCAGCACGUAAAUAUUGGCGUUAACUCUGUAAAUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAAGUUGGCCAUUCUCUGCAAAUGAUCC
Get precursor sequence
Structure
        10          20        30         40        50        60
AUUAACAUGAUCCUGAU--      AG   A          -| A        CGUUAACUC 
                   GUCAGC  UAC UUAGCAGCAC GU AAUAUUGG         U
                   CGGUUG  AUG AGUCGUCGUG CA UUAUGACC         G
CCUAGUAAACGUCUCUUAC      AA   A          U^ A        UCUAUAAAU 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Te Te Te To
Mature sequence

Cpi-Mir-15-P2a_5p
mirBase accessionMIMAT0037634
Sequence 
0- UAGCAGCACGUAAAUAUUGGCG -22
Get sequence
Star sequence

Cpi-Mir-15-P2a_3p*
mirBase accessionMIMAT0037635
Sequence 
40- CCAGUAUUAACUGUGCUGCUGAA -63
Get sequence