Mir-15-P2a

MirGeneDB ID

Cmi-Mir-15-P2a

Family name

MIR-15 (all species)

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-15-P1a Cmi-Mir-15-P1b Cmi-Mir-15-P1c Cmi-Mir-15-P2b Cmi-Mir-15-P2c

Orthologues

Ami-Mir-15-P2a Bta-Mir-15-P2a Cfa-Mir-15-P2a Cin-Mir-15-P2 Cja-Mir-15-P2a Cli-Mir-15-P2a Cpi-Mir-15-P2a Cpo-Mir-15-P2a Dno-Mir-15-P2a Dre-Mir-15-P2a1 Dre-Mir-15-P2a2 Eca-Mir-15-P2a Ete-Mir-15-P2a Gga-Mir-15-P2a Gja-Mir-15-P2a Gmo-Mir-15-P2a2 Hsa-Mir-15-P2a Laf-Mir-15-P2a Lch-Mir-15-P2a Loc-Mir-15-P2a Mal-Mir-15-P2a2 Mdo-Mir-15-P2a Mml-Mir-15-P2a Mmr-Mir-15-P2a Mmu-Mir-15-P2a Mun-Mir-15-P2a Neu-Mir-15-P2a Oan-Mir-15-P2a Ocu-Mir-15-P2a Pab-Mir-15-P2a Pbv-Mir-15-P2a Rno-Mir-15-P2a Sha-Mir-15-P2a Spt-Mir-15-P2a Sto-Mir-15-P2a Tgu-Mir-15-P2a Tni-Mir-15-P2a2 Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xtr-Mir-15-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI636198.1: 77560-77624 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2a)

Mir-15-P2a KI636198.1: 77560-77624 [-] UCSC Ensembl
Mir-15-P1a KI636198.1: 77762-77820 [-] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

UGAGCCCAAUUAUUGAUGUCAGCAGUGCUUUAGCAGCACGUAAAUAUUGGAGUUACGCUUUUUCCAAUGCCCCCAGUAUUAAUUGUGCUGCUGGAGUAAGGCUGACUGUUUCUGCUGCUACCAGA

Get precursor sequence

Structure

        10          20        30        40         50        60 
UGAGCCCAAUUAUUGAU--      AG               UA-|       AGUUACGCUU 
                   GUCAGC  UGCUUUAGCAGCACG   AAUAUUGG          U
                   CAGUCG  AUGAGGUCGUCGUGU   UUAUGACC          U
AGACCAUCGUCGUCUUUGU      GA               UAA^       CCCGUAACCU 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-15-P2a_5p

mirBase accession

None

Sequence

0- UAGCAGCACGUAAAUAUUGGAG -22

Get sequence

Star sequence

Cmi-Mir-15-P2a_3p* (predicted)

mirBase accession

None

Sequence

42- CCAGUAUUAAUUGUGCUGCUGGA -65

Get sequence